Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1862 and GFF1863 overlap by 4 nucleotides GFF1863 and GFF1864 overlap by 1 nucleotides GFF1864 and GFF1865 overlap by 6 nucleotides GFF1865 and GFF1866 are separated by 154 nucleotides
GFF1862 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 55,361 to 57,007
GFF1862
GFF1863 - Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase, at 57,004 to 57,339
GFF1863
GFF1864 - Polymyxin resistance protein PmrM, at 57,339 to 57,716
GFF1864
GFF1865 - Polymyxin resistance protein PmrD, at 57,711 to 57,911
GFF1865
GFF1866 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 58,066 to 59,433
GFF1866
Position (kb) 57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 56.362 kb on - strand, within GFF1862 at 56.382 kb on + strand, within GFF1862 at 56.577 kb on + strand, within GFF1862 at 56.578 kb on - strand, within GFF1862 at 56.581 kb on - strand, within GFF1862 at 56.707 kb on + strand, within GFF1862 at 56.708 kb on - strand, within GFF1862 at 56.771 kb on - strand, within GFF1862 at 56.771 kb on - strand, within GFF1862 at 56.809 kb on + strand, within GFF1862 at 56.809 kb on + strand, within GFF1862 at 56.809 kb on + strand, within GFF1862 at 56.810 kb on - strand, within GFF1862 at 56.810 kb on - strand, within GFF1862 at 56.890 kb on + strand at 56.960 kb on - strand at 56.967 kb on - strand at 56.985 kb on + strand at 57.137 kb on + strand, within GFF1863 at 57.487 kb on + strand, within GFF1864 at 57.755 kb on - strand, within GFF1865 at 57.856 kb on - strand, within GFF1865 at 57.856 kb on - strand, within GFF1865 at 58.119 kb on + strand at 58.235 kb on + strand, within GFF1866 at 58.236 kb on - strand, within GFF1866 at 58.606 kb on - strand, within GFF1866
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 56,362 - GFF1862 0.61 +1.1 56,382 + GFF1862 0.62 +1.1 56,577 + GFF1862 0.74 +1.5 56,578 - GFF1862 0.74 +0.2 56,581 - GFF1862 0.74 +0.1 56,707 + GFF1862 0.82 -0.1 56,708 - GFF1862 0.82 -0.8 56,771 - GFF1862 0.86 +0.7 56,771 - GFF1862 0.86 -0.4 56,809 + GFF1862 0.88 -0.6 56,809 + GFF1862 0.88 -0.1 56,809 + GFF1862 0.88 +0.6 56,810 - GFF1862 0.88 -2.2 56,810 - GFF1862 0.88 +0.4 56,890 + +0.4 56,960 - -2.7 56,967 - -4.7 56,985 + +0.1 57,137 + GFF1863 0.40 -0.4 57,487 + GFF1864 0.39 -2.0 57,755 - GFF1865 0.22 +0.2 57,856 - GFF1865 0.72 -0.2 57,856 - GFF1865 0.72 +0.4 58,119 + +0.3 58,235 + GFF1866 0.12 -1.0 58,236 - GFF1866 0.12 +0.3 58,606 - GFF1866 0.39 -1.0
Or see this region's nucleotide sequence