Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1822 and GFF1823 overlap by 11 nucleotides GFF1823 and GFF1824 are separated by 755 nucleotides GFF1824 and GFF1825 are separated by 208 nucleotides
GFF1822 - periplasmic diheme c-type cytochrome, NapB, at 5,294 to 5,557
GFF1822
GFF1823 - Ferredoxin-type protein NapF (periplasmic nitrate reductase), at 5,547 to 5,684
GFF1823
GFF1824 - Proteinase inhibitor I11, ecotin precursor, at 6,440 to 6,946
GFF1824
GFF1825 - Type I secretion system ATPase, LssB family LapB, at 7,155 to 8,798
GFF1825
Position (kb) 6
7 Strain fitness (log2 ratio) -1
0
1 at 5.648 kb on - strand, within GFF1823 at 5.754 kb on - strand at 6.070 kb on + strand at 6.436 kb on + strand at 6.436 kb on + strand at 6.668 kb on - strand, within GFF1824 at 6.723 kb on - strand, within GFF1824 at 6.723 kb on - strand, within GFF1824 at 6.731 kb on + strand, within GFF1824 at 6.732 kb on - strand, within GFF1824 at 6.732 kb on - strand, within GFF1824 at 6.732 kb on - strand, within GFF1824 at 6.869 kb on + strand, within GFF1824 at 6.869 kb on + strand, within GFF1824 at 6.869 kb on + strand, within GFF1824 at 6.869 kb on + strand, within GFF1824 at 6.896 kb on + strand at 6.897 kb on - strand at 6.924 kb on + strand at 7.327 kb on - strand, within GFF1825 at 7.334 kb on - strand, within GFF1825 at 7.480 kb on - strand, within GFF1825 at 7.480 kb on - strand, within GFF1825 at 7.480 kb on - strand, within GFF1825 at 7.640 kb on + strand, within GFF1825 at 7.641 kb on - strand, within GFF1825 at 7.738 kb on - strand, within GFF1825
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 5,648 - GFF1823 0.73 +0.6 5,754 - +1.2 6,070 + -0.3 6,436 + +0.1 6,436 + +1.3 6,668 - GFF1824 0.45 +1.2 6,723 - GFF1824 0.56 -0.3 6,723 - GFF1824 0.56 +0.1 6,731 + GFF1824 0.57 +0.3 6,732 - GFF1824 0.58 -0.1 6,732 - GFF1824 0.58 +0.5 6,732 - GFF1824 0.58 +0.3 6,869 + GFF1824 0.85 -0.1 6,869 + GFF1824 0.85 +0.6 6,869 + GFF1824 0.85 +0.2 6,869 + GFF1824 0.85 +0.2 6,896 + -0.5 6,897 - +0.0 6,924 + -1.0 7,327 - GFF1825 0.10 -0.0 7,334 - GFF1825 0.11 -0.2 7,480 - GFF1825 0.20 +0.1 7,480 - GFF1825 0.20 -0.0 7,480 - GFF1825 0.20 +0.4 7,640 + GFF1825 0.30 +0.0 7,641 - GFF1825 0.30 +0.2 7,738 - GFF1825 0.35 +0.4
Or see this region's nucleotide sequence