Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1798 and GFF1799 are separated by 61 nucleotides GFF1799 and GFF1800 are separated by 135 nucleotides GFF1800 and GFF1801 are separated by 86 nucleotides
GFF1798 - Arginine/ornithine antiporter ArcD, at 19,858 to 21,240
GFF1798
GFF1799 - Putative inner membrane protein, at 21,302 to 21,628
GFF1799
GFF1800 - Transcriptional regulatory protein RstA, at 21,764 to 22,495
GFF1800
GFF1801 - hypothetical protein, at 22,582 to 22,710
GFF1801
Position (kb) 21
22 Strain fitness (log2 ratio) -1
0
1 at 20.401 kb on - strand, within GFF1798 at 20.475 kb on + strand, within GFF1798 at 20.546 kb on + strand, within GFF1798 at 20.590 kb on + strand, within GFF1798 at 20.590 kb on + strand, within GFF1798 at 20.590 kb on + strand, within GFF1798 at 20.590 kb on + strand, within GFF1798 at 20.590 kb on + strand, within GFF1798 at 20.591 kb on - strand, within GFF1798 at 20.679 kb on - strand, within GFF1798 at 20.761 kb on - strand, within GFF1798 at 20.921 kb on - strand, within GFF1798 at 20.931 kb on - strand, within GFF1798 at 20.966 kb on - strand, within GFF1798 at 21.039 kb on + strand, within GFF1798 at 21.040 kb on - strand, within GFF1798 at 21.050 kb on + strand, within GFF1798 at 21.061 kb on + strand, within GFF1798 at 21.104 kb on - strand at 21.165 kb on - strand at 21.195 kb on - strand at 21.220 kb on - strand at 21.272 kb on - strand at 21.272 kb on - strand at 21.303 kb on + strand at 21.313 kb on + strand at 21.406 kb on - strand, within GFF1799 at 21.454 kb on + strand, within GFF1799 at 21.506 kb on - strand, within GFF1799 at 21.506 kb on - strand, within GFF1799 at 21.506 kb on - strand, within GFF1799 at 21.672 kb on + strand at 21.838 kb on + strand, within GFF1800 at 21.912 kb on + strand, within GFF1800 at 21.951 kb on + strand, within GFF1800 at 22.304 kb on - strand, within GFF1800 at 22.347 kb on - strand, within GFF1800 at 22.430 kb on - strand at 22.494 kb on - strand at 22.513 kb on - strand at 22.533 kb on - strand at 22.580 kb on - strand at 22.596 kb on + strand, within GFF1801
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 20,401 - GFF1798 0.39 -0.4 20,475 + GFF1798 0.45 +0.4 20,546 + GFF1798 0.50 +0.0 20,590 + GFF1798 0.53 +0.2 20,590 + GFF1798 0.53 +0.0 20,590 + GFF1798 0.53 -0.4 20,590 + GFF1798 0.53 +0.8 20,590 + GFF1798 0.53 +0.6 20,591 - GFF1798 0.53 -1.2 20,679 - GFF1798 0.59 -0.1 20,761 - GFF1798 0.65 -0.0 20,921 - GFF1798 0.77 +0.4 20,931 - GFF1798 0.78 +0.5 20,966 - GFF1798 0.80 -0.0 21,039 + GFF1798 0.85 +0.1 21,040 - GFF1798 0.85 -0.0 21,050 + GFF1798 0.86 +0.2 21,061 + GFF1798 0.87 +0.8 21,104 - -0.2 21,165 - -0.7 21,195 - +0.8 21,220 - -1.2 21,272 - -0.1 21,272 - +0.7 21,303 + +0.1 21,313 + -0.1 21,406 - GFF1799 0.32 -0.6 21,454 + GFF1799 0.46 -1.2 21,506 - GFF1799 0.62 -0.1 21,506 - GFF1799 0.62 -1.1 21,506 - GFF1799 0.62 -0.8 21,672 + -0.1 21,838 + GFF1800 0.10 +0.4 21,912 + GFF1800 0.20 +0.5 21,951 + GFF1800 0.26 +0.2 22,304 - GFF1800 0.74 +0.9 22,347 - GFF1800 0.80 +0.6 22,430 - -0.1 22,494 - -0.8 22,513 - +0.5 22,533 - -0.0 22,580 - +0.3 22,596 + GFF1801 0.11 +0.1
Or see this region's nucleotide sequence