Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1795 and GFF1796 are separated by 10 nucleotides GFF1796 and GFF1797 are separated by 526 nucleotides
GFF1795 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 15,160 to 16,548
GFF1795
GFF1796 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 16,559 to 18,088
GFF1796
GFF1797 - Protein ydgH precursor, at 18,615 to 19,559
GFF1797
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -1
0
1 at 15.619 kb on - strand, within GFF1795 at 15.775 kb on - strand, within GFF1795 at 15.775 kb on - strand, within GFF1795 at 15.779 kb on + strand, within GFF1795 at 15.780 kb on - strand, within GFF1795 at 15.780 kb on - strand, within GFF1795 at 16.093 kb on - strand, within GFF1795 at 16.116 kb on + strand, within GFF1795 at 16.233 kb on - strand, within GFF1795 at 16.703 kb on - strand at 16.741 kb on + strand, within GFF1796 at 16.774 kb on - strand, within GFF1796 at 16.878 kb on - strand, within GFF1796 at 16.885 kb on - strand, within GFF1796 at 17.054 kb on - strand, within GFF1796 at 17.209 kb on - strand, within GFF1796 at 17.219 kb on - strand, within GFF1796 at 17.267 kb on - strand, within GFF1796 at 17.440 kb on + strand, within GFF1796 at 17.660 kb on + strand, within GFF1796 at 17.700 kb on - strand, within GFF1796 at 17.765 kb on - strand, within GFF1796 at 17.872 kb on + strand, within GFF1796 at 18.088 kb on + strand at 18.393 kb on - strand at 18.463 kb on + strand at 18.476 kb on + strand at 18.571 kb on - strand at 18.571 kb on - strand at 18.724 kb on - strand, within GFF1797 at 18.724 kb on - strand, within GFF1797 at 18.752 kb on + strand, within GFF1797 at 18.819 kb on + strand, within GFF1797 at 18.819 kb on + strand, within GFF1797 at 18.820 kb on - strand, within GFF1797 at 18.879 kb on + strand, within GFF1797 at 18.881 kb on + strand, within GFF1797 at 18.882 kb on - strand, within GFF1797 at 19.003 kb on - strand, within GFF1797 at 19.062 kb on + strand, within GFF1797 at 19.072 kb on - strand, within GFF1797
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 15,619 - GFF1795 0.33 +0.8 15,775 - GFF1795 0.44 -0.7 15,775 - GFF1795 0.44 -0.2 15,779 + GFF1795 0.45 +0.4 15,780 - GFF1795 0.45 -0.1 15,780 - GFF1795 0.45 -0.5 16,093 - GFF1795 0.67 +0.5 16,116 + GFF1795 0.69 +0.4 16,233 - GFF1795 0.77 -0.6 16,703 - +0.3 16,741 + GFF1796 0.12 +0.1 16,774 - GFF1796 0.14 -0.3 16,878 - GFF1796 0.21 +0.3 16,885 - GFF1796 0.21 +0.6 17,054 - GFF1796 0.32 -0.1 17,209 - GFF1796 0.42 -0.1 17,219 - GFF1796 0.43 -1.0 17,267 - GFF1796 0.46 -0.1 17,440 + GFF1796 0.58 -0.3 17,660 + GFF1796 0.72 -0.2 17,700 - GFF1796 0.75 -1.2 17,765 - GFF1796 0.79 -0.0 17,872 + GFF1796 0.86 -0.5 18,088 + -0.5 18,393 - +0.8 18,463 + -0.2 18,476 + +0.4 18,571 - -0.3 18,571 - +0.8 18,724 - GFF1797 0.12 +0.2 18,724 - GFF1797 0.12 +0.6 18,752 + GFF1797 0.14 -0.2 18,819 + GFF1797 0.22 +0.4 18,819 + GFF1797 0.22 -0.0 18,820 - GFF1797 0.22 +0.5 18,879 + GFF1797 0.28 +0.4 18,881 + GFF1797 0.28 -0.4 18,882 - GFF1797 0.28 -0.3 19,003 - GFF1797 0.41 +0.2 19,062 + GFF1797 0.47 +0.8 19,072 - GFF1797 0.48 +0.4
Or see this region's nucleotide sequence