Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1767 and GFF1768 overlap by 14 nucleotides GFF1768 and GFF1769 are separated by 24 nucleotides GFF1769 and GFF1770 overlap by 28 nucleotides GFF1770 and GFF1771 are separated by 93 nucleotides
GFF1767 - Sensor protein torS (EC 2.7.3.-), at 70,653 to 73,340
GFF1767
GFF1768 - hypothetical protein, at 73,327 to 73,443
GFF1768
GFF1769 - Periplasmic protein torT precursor, at 73,468 to 74,508
GFF1769
GFF1770 - TorCAD operon transcriptional regulatory protein TorR, at 74,481 to 75,209
GFF1770
GFF1771 - Cytochrome c-type protein TorC, at 75,303 to 76,487
GFF1771
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 72.478 kb on + strand, within GFF1767 at 72.581 kb on - strand, within GFF1767 at 72.678 kb on - strand, within GFF1767 at 72.726 kb on + strand, within GFF1767 at 72.727 kb on - strand, within GFF1767 at 72.906 kb on - strand, within GFF1767 at 72.967 kb on - strand, within GFF1767 at 73.390 kb on + strand, within GFF1768 at 73.515 kb on + strand at 73.518 kb on - strand at 73.547 kb on + strand at 73.547 kb on + strand at 73.629 kb on - strand, within GFF1769 at 73.652 kb on - strand, within GFF1769 at 73.652 kb on - strand, within GFF1769 at 73.813 kb on - strand, within GFF1769 at 73.840 kb on + strand, within GFF1769 at 73.841 kb on - strand, within GFF1769 at 73.880 kb on + strand, within GFF1769 at 73.934 kb on - strand, within GFF1769 at 74.055 kb on + strand, within GFF1769 at 74.211 kb on + strand, within GFF1769 at 74.358 kb on - strand, within GFF1769 at 74.358 kb on - strand, within GFF1769 at 74.413 kb on - strand at 74.480 kb on - strand at 74.480 kb on - strand at 74.549 kb on + strand at 74.556 kb on + strand, within GFF1770 at 74.556 kb on + strand, within GFF1770 at 74.557 kb on - strand, within GFF1770 at 74.601 kb on + strand, within GFF1770 at 74.601 kb on + strand, within GFF1770 at 74.679 kb on + strand, within GFF1770 at 74.680 kb on - strand, within GFF1770 at 74.705 kb on + strand, within GFF1770 at 74.768 kb on + strand, within GFF1770 at 74.768 kb on + strand, within GFF1770 at 74.768 kb on + strand, within GFF1770 at 74.769 kb on - strand, within GFF1770 at 74.770 kb on + strand, within GFF1770 at 74.878 kb on + strand, within GFF1770 at 74.945 kb on + strand, within GFF1770 at 75.113 kb on - strand, within GFF1770 at 75.209 kb on + strand at 75.458 kb on + strand, within GFF1771 at 75.458 kb on + strand, within GFF1771 at 75.461 kb on + strand, within GFF1771 at 75.461 kb on + strand, within GFF1771 at 75.461 kb on + strand, within GFF1771 at 75.475 kb on - strand, within GFF1771 at 75.484 kb on - strand, within GFF1771 at 75.485 kb on + strand, within GFF1771 at 75.486 kb on - strand, within GFF1771
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 72,478 + GFF1767 0.68 -0.2 72,581 - GFF1767 0.72 +1.5 72,678 - GFF1767 0.75 +0.1 72,726 + GFF1767 0.77 +1.1 72,727 - GFF1767 0.77 -0.1 72,906 - GFF1767 0.84 +0.1 72,967 - GFF1767 0.86 -0.7 73,390 + GFF1768 0.54 +1.0 73,515 + +0.5 73,518 - +0.0 73,547 + +0.2 73,547 + +0.4 73,629 - GFF1769 0.15 +0.0 73,652 - GFF1769 0.18 +0.2 73,652 - GFF1769 0.18 +0.5 73,813 - GFF1769 0.33 -0.4 73,840 + GFF1769 0.36 +0.4 73,841 - GFF1769 0.36 +0.3 73,880 + GFF1769 0.40 +0.2 73,934 - GFF1769 0.45 +0.3 74,055 + GFF1769 0.56 +0.5 74,211 + GFF1769 0.71 +0.0 74,358 - GFF1769 0.85 -0.2 74,358 - GFF1769 0.85 +0.6 74,413 - +0.2 74,480 - -0.8 74,480 - +1.0 74,549 + -0.7 74,556 + GFF1770 0.10 -0.3 74,556 + GFF1770 0.10 +0.4 74,557 - GFF1770 0.10 +0.4 74,601 + GFF1770 0.16 +0.1 74,601 + GFF1770 0.16 -0.8 74,679 + GFF1770 0.27 -1.8 74,680 - GFF1770 0.27 +0.2 74,705 + GFF1770 0.31 -0.0 74,768 + GFF1770 0.39 -0.6 74,768 + GFF1770 0.39 -0.5 74,768 + GFF1770 0.39 -1.0 74,769 - GFF1770 0.40 +0.0 74,770 + GFF1770 0.40 +0.5 74,878 + GFF1770 0.54 -0.1 74,945 + GFF1770 0.64 -0.9 75,113 - GFF1770 0.87 +0.1 75,209 + -0.5 75,458 + GFF1771 0.13 +0.3 75,458 + GFF1771 0.13 +0.2 75,461 + GFF1771 0.13 +0.1 75,461 + GFF1771 0.13 +0.1 75,461 + GFF1771 0.13 +0.2 75,475 - GFF1771 0.15 -0.1 75,484 - GFF1771 0.15 +0.4 75,485 + GFF1771 0.15 -0.4 75,486 - GFF1771 0.15 -0.2
Or see this region's nucleotide sequence