Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1763

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1761 and GFF1762 are separated by 260 nucleotidesGFF1762 and GFF1763 overlap by 4 nucleotidesGFF1763 and GFF1764 overlap by 17 nucleotidesGFF1764 and GFF1765 overlap by 4 nucleotides GFF1761 - Promiscuous sugar phosphatase YidA, haloacid dehalogenase-like phosphatase family, at 64,789 to 65,634 GFF1761 GFF1762 - D-Galactonate repressor DgoR, at 65,895 to 66,584 GFF1762 GFF1763 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 66,581 to 67,459 GFF1763 GFF1764 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 67,443 to 68,060 GFF1764 GFF1765 - Galactonate dehydratase (EC 4.2.1.6), at 68,057 to 69,205 GFF1765 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1at 65.715 kb on - strandat 65.819 kb on + strandat 65.819 kb on + strandat 65.820 kb on - strandat 65.862 kb on + strandat 65.862 kb on + strandat 65.862 kb on + strandat 65.863 kb on - strandat 65.863 kb on - strandat 65.906 kb on + strandat 65.954 kb on + strandat 65.954 kb on + strandat 65.954 kb on + strandat 66.121 kb on - strand, within GFF1762at 66.221 kb on - strand, within GFF1762at 66.300 kb on - strand, within GFF1762at 66.388 kb on + strand, within GFF1762at 66.388 kb on + strand, within GFF1762at 66.410 kb on - strand, within GFF1762at 66.421 kb on + strand, within GFF1762at 66.479 kb on + strand, within GFF1762at 66.479 kb on + strand, within GFF1762at 66.479 kb on + strand, within GFF1762at 66.480 kb on - strand, within GFF1762at 66.593 kb on + strandat 66.594 kb on - strandat 66.701 kb on - strand, within GFF1763at 66.701 kb on - strand, within GFF1763at 66.787 kb on + strand, within GFF1763at 66.792 kb on + strand, within GFF1763at 66.856 kb on - strand, within GFF1763at 66.983 kb on + strand, within GFF1763at 66.984 kb on - strand, within GFF1763at 67.166 kb on - strand, within GFF1763at 67.356 kb on - strand, within GFF1763at 67.369 kb on + strand, within GFF1763at 67.369 kb on + strand, within GFF1763at 67.458 kb on - strandat 67.475 kb on + strandat 67.480 kb on + strandat 67.487 kb on + strandat 67.488 kb on - strandat 67.547 kb on + strand, within GFF1764at 67.549 kb on + strand, within GFF1764at 67.550 kb on - strand, within GFF1764at 67.609 kb on - strand, within GFF1764at 67.642 kb on + strand, within GFF1764at 67.660 kb on + strand, within GFF1764at 67.661 kb on - strand, within GFF1764at 67.740 kb on + strand, within GFF1764at 67.741 kb on - strand, within GFF1764at 67.741 kb on - strand, within GFF1764at 68.054 kb on + strandat 68.081 kb on + strandat 68.082 kb on - strandat 68.088 kb on + strandat 68.174 kb on - strand, within GFF1765at 68.190 kb on + strand, within GFF1765at 68.191 kb on - strand, within GFF1765at 68.191 kb on - strand, within GFF1765at 68.208 kb on - strand, within GFF1765at 68.253 kb on + strand, within GFF1765at 68.254 kb on - strand, within GFF1765at 68.254 kb on - strand, within GFF1765at 68.406 kb on - strand, within GFF1765at 68.406 kb on - strand, within GFF1765at 68.408 kb on - strand, within GFF1765

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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65,715 - -0.0
65,819 + -1.2
65,819 + +0.0
65,820 - +0.4
65,862 + +0.2
65,862 + -0.5
65,862 + -0.3
65,863 - +0.7
65,863 - -0.1
65,906 + +1.1
65,954 + +0.2
65,954 + +0.0
65,954 + -0.4
66,121 - GFF1762 0.33 -0.1
66,221 - GFF1762 0.47 -0.4
66,300 - GFF1762 0.59 -0.1
66,388 + GFF1762 0.71 -0.0
66,388 + GFF1762 0.71 +0.1
66,410 - GFF1762 0.75 +0.0
66,421 + GFF1762 0.76 -0.4
66,479 + GFF1762 0.85 +0.1
66,479 + GFF1762 0.85 +0.4
66,479 + GFF1762 0.85 -0.2
66,480 - GFF1762 0.85 -0.5
66,593 + -0.1
66,594 - -0.0
66,701 - GFF1763 0.14 -0.2
66,701 - GFF1763 0.14 -0.4
66,787 + GFF1763 0.23 -0.7
66,792 + GFF1763 0.24 -0.2
66,856 - GFF1763 0.31 +0.1
66,983 + GFF1763 0.46 -1.6
66,984 - GFF1763 0.46 -0.2
67,166 - GFF1763 0.67 +0.2
67,356 - GFF1763 0.88 +0.6
67,369 + GFF1763 0.90 -1.1
67,369 + GFF1763 0.90 -0.2
67,458 - -0.6
67,475 + -0.3
67,480 + +0.3
67,487 + +0.2
67,488 - -0.8
67,547 + GFF1764 0.17 -0.2
67,549 + GFF1764 0.17 -0.0
67,550 - GFF1764 0.17 +0.2
67,609 - GFF1764 0.27 +0.5
67,642 + GFF1764 0.32 -0.5
67,660 + GFF1764 0.35 +0.5
67,661 - GFF1764 0.35 +0.4
67,740 + GFF1764 0.48 -0.5
67,741 - GFF1764 0.48 +0.1
67,741 - GFF1764 0.48 +1.3
68,054 + -1.0
68,081 + +0.2
68,082 - +0.5
68,088 + +0.0
68,174 - GFF1765 0.10 -0.3
68,190 + GFF1765 0.12 -0.2
68,191 - GFF1765 0.12 +0.3
68,191 - GFF1765 0.12 +0.4
68,208 - GFF1765 0.13 -0.5
68,253 + GFF1765 0.17 -0.2
68,254 - GFF1765 0.17 +0.7
68,254 - GFF1765 0.17 +0.4
68,406 - GFF1765 0.30 +0.1
68,406 - GFF1765 0.30 -0.1
68,408 - GFF1765 0.31 -0.1

Or see this region's nucleotide sequence