Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF172 and GFF173 overlap by 25 nucleotides GFF173 and GFF174 overlap by 17 nucleotides GFF174 and GFF175 are separated by 38 nucleotides
GFF172 - Thiamin ABC transporter, substrate-binding component, at 162,420 to 163,403
GFF172
GFF173 - Thiamin ABC transporter, transmembrane component, at 163,379 to 164,989
GFF173
GFF174 - Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ, at 164,973 to 165,680
GFF174
GFF175 - DedA family inner membrane protein YabI, at 165,719 to 166,486
GFF175
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 162.492 kb on + strand at 162.698 kb on + strand, within GFF172 at 163.140 kb on + strand, within GFF172 at 163.140 kb on + strand, within GFF172 at 163.141 kb on - strand, within GFF172 at 163.144 kb on + strand, within GFF172 at 163.144 kb on + strand, within GFF172 at 163.145 kb on - strand, within GFF172 at 163.150 kb on + strand, within GFF172 at 163.151 kb on - strand, within GFF172 at 163.151 kb on - strand, within GFF172 at 163.529 kb on + strand at 163.690 kb on - strand, within GFF173 at 163.721 kb on + strand, within GFF173 at 163.722 kb on - strand, within GFF173 at 164.090 kb on + strand, within GFF173 at 164.158 kb on - strand, within GFF173 at 164.256 kb on + strand, within GFF173 at 164.257 kb on - strand, within GFF173 at 164.472 kb on + strand, within GFF173 at 164.790 kb on + strand, within GFF173 at 164.791 kb on - strand, within GFF173 at 164.859 kb on - strand at 164.864 kb on + strand at 164.865 kb on - strand at 164.978 kb on - strand at 165.026 kb on + strand at 165.026 kb on + strand at 165.753 kb on + strand at 165.754 kb on - strand at 165.754 kb on - strand at 165.755 kb on + strand at 165.829 kb on - strand, within GFF175
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 162,492 + +0.1 162,698 + GFF172 0.28 +0.0 163,140 + GFF172 0.73 +0.0 163,140 + GFF172 0.73 +0.2 163,141 - GFF172 0.73 +0.9 163,144 + GFF172 0.74 +1.2 163,144 + GFF172 0.74 +0.1 163,145 - GFF172 0.74 -0.7 163,150 + GFF172 0.74 +0.6 163,151 - GFF172 0.74 +0.6 163,151 - GFF172 0.74 +1.0 163,529 + -0.4 163,690 - GFF173 0.19 -0.4 163,721 + GFF173 0.21 -1.4 163,722 - GFF173 0.21 -3.4 164,090 + GFF173 0.44 +0.4 164,158 - GFF173 0.48 +0.5 164,256 + GFF173 0.54 -0.2 164,257 - GFF173 0.55 +0.1 164,472 + GFF173 0.68 -0.0 164,790 + GFF173 0.88 -0.7 164,791 - GFF173 0.88 -0.3 164,859 - +0.2 164,864 + -0.1 164,865 - -0.1 164,978 - +0.0 165,026 + +0.4 165,026 + +0.2 165,753 + +0.5 165,754 - -1.1 165,754 - +0.4 165,755 + +0.3 165,829 - GFF175 0.14 +1.1
Or see this region's nucleotide sequence