Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1589

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1588 and GFF1589 are separated by 69 nucleotidesGFF1589 and GFF1590 are separated by 164 nucleotides GFF1588 - L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1), at 45,328 to 46,392 GFF1588 GFF1589 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1), at 46,462 to 47,457 GFF1589 GFF1590 - MFS permease protein, at 47,622 to 48,806 GFF1590 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.601 kb on + strand, within GFF1588at 45.769 kb on - strand, within GFF1588at 45.983 kb on + strand, within GFF1588at 45.984 kb on - strand, within GFF1588at 45.995 kb on + strand, within GFF1588at 45.996 kb on - strand, within GFF1588at 45.996 kb on - strand, within GFF1588at 46.037 kb on + strand, within GFF1588at 46.098 kb on - strand, within GFF1588at 46.208 kb on + strand, within GFF1588at 46.209 kb on - strand, within GFF1588at 46.211 kb on + strand, within GFF1588at 46.346 kb on - strandat 46.391 kb on - strandat 46.444 kb on + strandat 46.449 kb on + strandat 46.449 kb on + strandat 46.630 kb on + strand, within GFF1589at 46.631 kb on - strand, within GFF1589at 46.632 kb on + strand, within GFF1589at 46.637 kb on + strand, within GFF1589at 46.638 kb on - strand, within GFF1589at 46.667 kb on + strand, within GFF1589at 46.672 kb on + strand, within GFF1589at 46.672 kb on + strand, within GFF1589at 46.673 kb on - strand, within GFF1589at 46.737 kb on + strand, within GFF1589at 46.737 kb on + strand, within GFF1589at 46.738 kb on - strand, within GFF1589at 46.738 kb on - strand, within GFF1589at 46.741 kb on + strand, within GFF1589at 46.741 kb on + strand, within GFF1589at 46.742 kb on - strand, within GFF1589at 47.020 kb on + strand, within GFF1589at 47.020 kb on + strand, within GFF1589at 47.020 kb on + strand, within GFF1589at 47.078 kb on - strand, within GFF1589at 47.078 kb on - strand, within GFF1589at 47.078 kb on - strand, within GFF1589at 47.111 kb on + strand, within GFF1589at 47.229 kb on + strand, within GFF1589at 47.230 kb on - strand, within GFF1589at 47.238 kb on + strand, within GFF1589at 47.238 kb on + strand, within GFF1589at 47.239 kb on - strand, within GFF1589at 47.239 kb on - strand, within GFF1589at 47.385 kb on - strandat 47.455 kb on + strandat 47.455 kb on + strandat 47.558 kb on + strandat 47.559 kb on - strandat 47.665 kb on + strandat 47.704 kb on - strandat 47.704 kb on - strandat 47.930 kb on - strand, within GFF1590at 48.208 kb on - strand, within GFF1590at 48.229 kb on + strand, within GFF1590at 48.354 kb on + strand, within GFF1590at 48.444 kb on - strand, within GFF1590

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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45,601 + GFF1588 0.26 -0.2
45,769 - GFF1588 0.41 -0.2
45,983 + GFF1588 0.62 +0.1
45,984 - GFF1588 0.62 -1.9
45,995 + GFF1588 0.63 +0.2
45,996 - GFF1588 0.63 -0.1
45,996 - GFF1588 0.63 +0.2
46,037 + GFF1588 0.67 -0.2
46,098 - GFF1588 0.72 +0.6
46,208 + GFF1588 0.83 +0.7
46,209 - GFF1588 0.83 +0.8
46,211 + GFF1588 0.83 -0.2
46,346 - -0.2
46,391 - +0.1
46,444 + -0.2
46,449 + -1.6
46,449 + -1.2
46,630 + GFF1589 0.17 -0.2
46,631 - GFF1589 0.17 +0.4
46,632 + GFF1589 0.17 -0.2
46,637 + GFF1589 0.18 +0.5
46,638 - GFF1589 0.18 -0.4
46,667 + GFF1589 0.21 -0.3
46,672 + GFF1589 0.21 +0.2
46,672 + GFF1589 0.21 +0.2
46,673 - GFF1589 0.21 +0.2
46,737 + GFF1589 0.28 +0.8
46,737 + GFF1589 0.28 -0.3
46,738 - GFF1589 0.28 -0.8
46,738 - GFF1589 0.28 +0.3
46,741 + GFF1589 0.28 +0.4
46,741 + GFF1589 0.28 +0.8
46,742 - GFF1589 0.28 -0.2
47,020 + GFF1589 0.56 +0.6
47,020 + GFF1589 0.56 -0.5
47,020 + GFF1589 0.56 +0.1
47,078 - GFF1589 0.62 +0.3
47,078 - GFF1589 0.62 +1.4
47,078 - GFF1589 0.62 +0.2
47,111 + GFF1589 0.65 -0.3
47,229 + GFF1589 0.77 +0.2
47,230 - GFF1589 0.77 -0.4
47,238 + GFF1589 0.78 +1.3
47,238 + GFF1589 0.78 +0.1
47,239 - GFF1589 0.78 +1.1
47,239 - GFF1589 0.78 +0.1
47,385 - -0.1
47,455 + +0.1
47,455 + -0.1
47,558 + +0.1
47,559 - -0.1
47,665 + +0.2
47,704 - +0.3
47,704 - +0.7
47,930 - GFF1590 0.26 -0.2
48,208 - GFF1590 0.49 -0.1
48,229 + GFF1590 0.51 +0.1
48,354 + GFF1590 0.62 +0.3
48,444 - GFF1590 0.69 -0.7

Or see this region's nucleotide sequence