Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1511 and GFF1512 overlap by 7 nucleotides GFF1512 and GFF1513 overlap by 14 nucleotides GFF1513 and GFF1514 overlap by 8 nucleotides GFF1514 and GFF1515 overlap by 21 nucleotides
GFF1511 - FIG138517: Putative lipid carrier protein, at 18,502 to 19,026
GFF1511
GFF1512 - FIG002208: Acetyltransferase (EC 2.3.1.-), at 19,020 to 19,523
GFF1512
GFF1513 - FIG137864: putative endonuclease containing a URI domain, at 19,510 to 19,872
GFF1513
GFF1514 - FIG01219785: hypothetical protein, at 19,865 to 20,308
GFF1514
GFF1515 - General stress protein 18, at 20,288 to 20,806
GFF1515
Position (kb) 19
20 Strain fitness (log2 ratio) -1
0
1 at 18.527 kb on + strand at 18.527 kb on + strand at 18.880 kb on + strand, within GFF1511 at 18.880 kb on + strand, within GFF1511 at 18.881 kb on - strand, within GFF1511 at 19.024 kb on + strand at 19.024 kb on + strand at 19.058 kb on + strand at 19.225 kb on + strand, within GFF1512 at 19.295 kb on - strand, within GFF1512 at 19.295 kb on - strand, within GFF1512 at 19.295 kb on - strand, within GFF1512 at 19.299 kb on + strand, within GFF1512 at 19.299 kb on + strand, within GFF1512 at 19.366 kb on + strand, within GFF1512 at 19.368 kb on + strand, within GFF1512 at 19.369 kb on - strand, within GFF1512 at 19.369 kb on - strand, within GFF1512 at 19.370 kb on + strand, within GFF1512 at 19.522 kb on - strand at 19.620 kb on - strand, within GFF1513 at 19.624 kb on + strand, within GFF1513 at 19.782 kb on + strand, within GFF1513 at 19.799 kb on + strand, within GFF1513 at 19.800 kb on - strand, within GFF1513 at 19.861 kb on - strand at 19.861 kb on - strand at 19.876 kb on + strand at 19.876 kb on + strand at 19.876 kb on + strand at 19.926 kb on + strand, within GFF1514 at 19.926 kb on + strand, within GFF1514 at 19.927 kb on - strand, within GFF1514 at 19.994 kb on + strand, within GFF1514 at 20.641 kb on + strand, within GFF1515 at 20.801 kb on - strand at 20.862 kb on - strand at 20.865 kb on + strand at 20.865 kb on + strand at 20.865 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 18,527 + -0.1 18,527 + -0.3 18,880 + GFF1511 0.72 +0.5 18,880 + GFF1511 0.72 +0.6 18,881 - GFF1511 0.72 +0.3 19,024 + -0.8 19,024 + -0.1 19,058 + +0.3 19,225 + GFF1512 0.41 -0.2 19,295 - GFF1512 0.55 +0.4 19,295 - GFF1512 0.55 +0.5 19,295 - GFF1512 0.55 +0.1 19,299 + GFF1512 0.55 -0.7 19,299 + GFF1512 0.55 -0.9 19,366 + GFF1512 0.69 -0.2 19,368 + GFF1512 0.69 +0.5 19,369 - GFF1512 0.69 -1.1 19,369 - GFF1512 0.69 +0.0 19,370 + GFF1512 0.69 -0.0 19,522 - +0.3 19,620 - GFF1513 0.30 -1.3 19,624 + GFF1513 0.31 -0.3 19,782 + GFF1513 0.75 -0.3 19,799 + GFF1513 0.80 -0.6 19,800 - GFF1513 0.80 +0.5 19,861 - +0.1 19,861 - -0.0 19,876 + -0.3 19,876 + -0.6 19,876 + -1.7 19,926 + GFF1514 0.14 -0.1 19,926 + GFF1514 0.14 +0.3 19,927 - GFF1514 0.14 +0.0 19,994 + GFF1514 0.29 +0.3 20,641 + GFF1515 0.68 -0.2 20,801 - -0.0 20,862 - +0.3 20,865 + -0.4 20,865 + -0.1 20,865 + +1.0
Or see this region's nucleotide sequence