Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1467 and GFF1468 are separated by 166 nucleotides GFF1468 and GFF1469 are separated by 0 nucleotides GFF1469 and GFF1470 overlap by 4 nucleotides
GFF1467 - L-Proline/Glycine betaine transporter ProP, at 131,101 to 132,603
GFF1467
GFF1468 - Sensor protein basS/pmrB (EC 2.7.3.-), at 132,770 to 133,849
GFF1468
GFF1469 - Transcriptional regulatory protein basR/pmrA, at 133,850 to 134,518
GFF1469
GFF1470 - Phosphoethanolamine transferase EptA specific for the 1 phosphate group of core-lipid A, at 134,515 to 136,158
GFF1470
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1 at 131.926 kb on + strand, within GFF1467 at 131.926 kb on + strand, within GFF1467 at 131.927 kb on - strand, within GFF1467 at 131.942 kb on - strand, within GFF1467 at 131.942 kb on - strand, within GFF1467 at 131.942 kb on - strand, within GFF1467 at 131.942 kb on - strand, within GFF1467 at 131.953 kb on + strand, within GFF1467 at 131.954 kb on - strand, within GFF1467 at 131.964 kb on + strand, within GFF1467 at 131.964 kb on + strand, within GFF1467 at 131.965 kb on - strand, within GFF1467 at 131.974 kb on + strand, within GFF1467 at 132.145 kb on - strand, within GFF1467 at 132.205 kb on - strand, within GFF1467 at 132.406 kb on - strand, within GFF1467 at 132.507 kb on + strand at 132.508 kb on - strand at 132.641 kb on + strand at 132.683 kb on - strand at 132.711 kb on + strand at 132.711 kb on + strand at 132.739 kb on + strand at 132.740 kb on - strand at 132.757 kb on + strand at 132.761 kb on - strand at 132.771 kb on + strand at 132.848 kb on + strand at 132.848 kb on + strand at 132.930 kb on - strand, within GFF1468 at 132.930 kb on - strand, within GFF1468 at 133.038 kb on + strand, within GFF1468 at 133.038 kb on + strand, within GFF1468 at 133.039 kb on - strand, within GFF1468 at 133.083 kb on - strand, within GFF1468 at 133.083 kb on - strand, within GFF1468 at 133.176 kb on + strand, within GFF1468 at 133.176 kb on + strand, within GFF1468 at 133.177 kb on - strand, within GFF1468 at 133.219 kb on - strand, within GFF1468 at 133.340 kb on + strand, within GFF1468 at 133.379 kb on + strand, within GFF1468 at 133.517 kb on - strand, within GFF1468 at 133.615 kb on + strand, within GFF1468 at 133.616 kb on - strand, within GFF1468 at 133.669 kb on + strand, within GFF1468 at 133.754 kb on - strand at 133.754 kb on - strand at 133.780 kb on + strand at 133.851 kb on + strand at 133.878 kb on + strand at 133.933 kb on + strand, within GFF1469 at 133.933 kb on + strand, within GFF1469 at 133.937 kb on + strand, within GFF1469 at 133.937 kb on + strand, within GFF1469 at 133.938 kb on - strand, within GFF1469 at 133.938 kb on - strand, within GFF1469 at 133.938 kb on - strand, within GFF1469 at 133.939 kb on + strand, within GFF1469 at 133.939 kb on + strand, within GFF1469 at 133.940 kb on - strand, within GFF1469 at 133.984 kb on - strand, within GFF1469 at 133.984 kb on - strand, within GFF1469 at 133.993 kb on + strand, within GFF1469 at 133.994 kb on - strand, within GFF1469 at 133.995 kb on + strand, within GFF1469 at 134.056 kb on - strand, within GFF1469 at 134.111 kb on + strand, within GFF1469 at 134.112 kb on - strand, within GFF1469 at 134.114 kb on - strand, within GFF1469 at 134.114 kb on - strand, within GFF1469 at 134.162 kb on - strand, within GFF1469 at 134.307 kb on + strand, within GFF1469 at 134.404 kb on + strand, within GFF1469 at 134.469 kb on - strand at 134.483 kb on + strand at 134.484 kb on - strand at 134.567 kb on + strand at 134.568 kb on - strand at 134.579 kb on - strand at 134.673 kb on - strand at 134.805 kb on - strand, within GFF1470
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 131,926 + GFF1467 0.55 -0.5 131,926 + GFF1467 0.55 -0.2 131,927 - GFF1467 0.55 +0.1 131,942 - GFF1467 0.56 -0.0 131,942 - GFF1467 0.56 -1.5 131,942 - GFF1467 0.56 +0.2 131,942 - GFF1467 0.56 -0.3 131,953 + GFF1467 0.57 +0.2 131,954 - GFF1467 0.57 +0.7 131,964 + GFF1467 0.57 +0.9 131,964 + GFF1467 0.57 -0.0 131,965 - GFF1467 0.57 +1.2 131,974 + GFF1467 0.58 -0.6 132,145 - GFF1467 0.69 +0.1 132,205 - GFF1467 0.73 +0.6 132,406 - GFF1467 0.87 +0.4 132,507 + +0.4 132,508 - +0.5 132,641 + -0.2 132,683 - +0.5 132,711 + -0.1 132,711 + +0.2 132,739 + +1.1 132,740 - +0.7 132,757 + +0.3 132,761 - +0.0 132,771 + -0.2 132,848 + -0.1 132,848 + -0.2 132,930 - GFF1468 0.15 +0.2 132,930 - GFF1468 0.15 +0.9 133,038 + GFF1468 0.25 -0.2 133,038 + GFF1468 0.25 +0.9 133,039 - GFF1468 0.25 +0.1 133,083 - GFF1468 0.29 +0.1 133,083 - GFF1468 0.29 +0.1 133,176 + GFF1468 0.38 +0.6 133,176 + GFF1468 0.38 -0.5 133,177 - GFF1468 0.38 +0.2 133,219 - GFF1468 0.42 -0.2 133,340 + GFF1468 0.53 +1.1 133,379 + GFF1468 0.56 -0.3 133,517 - GFF1468 0.69 +0.4 133,615 + GFF1468 0.78 +0.6 133,616 - GFF1468 0.78 +0.2 133,669 + GFF1468 0.83 -0.8 133,754 - -0.7 133,754 - -0.1 133,780 + -0.1 133,851 + +1.4 133,878 + +0.1 133,933 + GFF1469 0.12 -0.6 133,933 + GFF1469 0.12 +0.1 133,937 + GFF1469 0.13 -0.1 133,937 + GFF1469 0.13 -0.6 133,938 - GFF1469 0.13 +0.3 133,938 - GFF1469 0.13 +0.2 133,938 - GFF1469 0.13 +0.2 133,939 + GFF1469 0.13 -0.1 133,939 + GFF1469 0.13 -0.2 133,940 - GFF1469 0.13 +0.6 133,984 - GFF1469 0.20 +0.4 133,984 - GFF1469 0.20 -0.0 133,993 + GFF1469 0.21 -0.6 133,994 - GFF1469 0.22 +0.1 133,995 + GFF1469 0.22 +0.3 134,056 - GFF1469 0.31 -1.0 134,111 + GFF1469 0.39 -1.2 134,112 - GFF1469 0.39 -0.2 134,114 - GFF1469 0.39 +0.1 134,114 - GFF1469 0.39 -0.1 134,162 - GFF1469 0.47 -0.1 134,307 + GFF1469 0.68 +0.2 134,404 + GFF1469 0.83 -0.2 134,469 - +0.1 134,483 + +0.4 134,484 - +0.0 134,567 + -0.0 134,568 - +0.2 134,579 - -0.4 134,673 - -0.1 134,805 - GFF1470 0.18 +0.0
Or see this region's nucleotide sequence