Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1457 and GFF1458 overlap by 4 nucleotides GFF1458 and GFF1459 are separated by 139 nucleotides GFF1459 and GFF1460 are separated by 76 nucleotides GFF1460 and GFF1461 are separated by 157 nucleotides
GFF1457 - Cytochrome c heme lyase subunit CcmF, at 119,963 to 122,185
GFF1457
GFF1458 - Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly, at 122,182 to 122,802
GFF1458
GFF1459 - hypothetical protein, at 122,942 to 123,070
GFF1459
GFF1460 - Glutamate-aspartate carrier protein, at 123,147 to 124,457
GFF1460
GFF1461 - FIG01200701: possible membrane protein, at 124,615 to 125,283
GFF1461
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1 at 122.229 kb on - strand at 122.452 kb on + strand, within GFF1458 at 122.452 kb on + strand, within GFF1458 at 122.452 kb on + strand, within GFF1458 at 122.577 kb on + strand, within GFF1458 at 122.577 kb on + strand, within GFF1458 at 122.577 kb on + strand, within GFF1458 at 122.578 kb on - strand, within GFF1458 at 122.578 kb on - strand, within GFF1458 at 122.578 kb on - strand, within GFF1458 at 122.607 kb on + strand, within GFF1458 at 122.607 kb on + strand, within GFF1458 at 122.607 kb on + strand, within GFF1458 at 122.608 kb on - strand, within GFF1458 at 123.028 kb on - strand, within GFF1459 at 123.035 kb on - strand, within GFF1459 at 123.088 kb on + strand at 123.089 kb on - strand at 123.092 kb on + strand at 123.093 kb on - strand at 123.093 kb on - strand at 123.228 kb on + strand at 123.285 kb on - strand, within GFF1460 at 123.291 kb on - strand, within GFF1460 at 123.302 kb on + strand, within GFF1460 at 123.485 kb on + strand, within GFF1460 at 123.486 kb on - strand, within GFF1460 at 123.486 kb on - strand, within GFF1460 at 123.541 kb on + strand, within GFF1460 at 123.574 kb on + strand, within GFF1460 at 123.762 kb on + strand, within GFF1460 at 123.994 kb on + strand, within GFF1460 at 123.994 kb on + strand, within GFF1460 at 124.043 kb on + strand, within GFF1460 at 124.043 kb on + strand, within GFF1460 at 124.100 kb on - strand, within GFF1460 at 124.135 kb on + strand, within GFF1460 at 124.137 kb on + strand, within GFF1460 at 124.171 kb on + strand, within GFF1460 at 124.333 kb on + strand at 124.509 kb on - strand at 124.594 kb on - strand at 125.089 kb on + strand, within GFF1461 at 125.297 kb on - strand at 125.351 kb on - strand at 125.422 kb on - strand at 125.451 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 122,229 - +0.1 122,452 + GFF1458 0.43 -0.1 122,452 + GFF1458 0.43 -0.2 122,452 + GFF1458 0.43 +0.6 122,577 + GFF1458 0.64 -0.3 122,577 + GFF1458 0.64 -1.1 122,577 + GFF1458 0.64 -0.7 122,578 - GFF1458 0.64 +0.2 122,578 - GFF1458 0.64 -0.0 122,578 - GFF1458 0.64 -0.3 122,607 + GFF1458 0.68 +0.1 122,607 + GFF1458 0.68 +0.3 122,607 + GFF1458 0.68 +1.0 122,608 - GFF1458 0.69 -0.1 123,028 - GFF1459 0.67 -0.4 123,035 - GFF1459 0.72 -0.3 123,088 + +1.1 123,089 - -0.2 123,092 + +0.3 123,093 - -0.2 123,093 - -0.3 123,228 + +0.0 123,285 - GFF1460 0.11 -0.1 123,291 - GFF1460 0.11 -0.9 123,302 + GFF1460 0.12 -0.4 123,485 + GFF1460 0.26 -0.7 123,486 - GFF1460 0.26 -0.6 123,486 - GFF1460 0.26 -0.3 123,541 + GFF1460 0.30 -0.3 123,574 + GFF1460 0.33 -0.4 123,762 + GFF1460 0.47 -0.3 123,994 + GFF1460 0.65 +0.3 123,994 + GFF1460 0.65 -0.4 124,043 + GFF1460 0.68 -0.0 124,043 + GFF1460 0.68 -0.4 124,100 - GFF1460 0.73 -0.3 124,135 + GFF1460 0.75 -0.2 124,137 + GFF1460 0.76 +0.2 124,171 + GFF1460 0.78 -0.1 124,333 + +0.1 124,509 - -0.0 124,594 - +1.4 125,089 + GFF1461 0.71 -0.5 125,297 - +0.0 125,351 - -0.3 125,422 - +0.4 125,451 + +0.4
Or see this region's nucleotide sequence