Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1433

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1431 and GFF1432 are separated by 25 nucleotidesGFF1432 and GFF1433 are separated by 509 nucleotidesGFF1433 and GFF1434 overlap by 4 nucleotides GFF1431 - FIG01048353: hypothetical protein, at 77,157 to 77,312 GFF1431 GFF1432 - hypothetical protein, at 77,338 to 77,478 GFF1432 GFF1433 - Putative inner membrane or exported protein, at 77,988 to 78,620 GFF1433 GFF1434 - FIG00732228: membrane protein, at 78,617 to 80,005 GFF1434 Position (kb) 77 78 79Strain fitness (log2 ratio) -1 0 1at 77.042 kb on - strandat 78.271 kb on + strand, within GFF1433at 78.305 kb on - strand, within GFF1433at 79.100 kb on - strand, within GFF1434at 79.189 kb on + strand, within GFF1434at 79.190 kb on - strand, within GFF1434

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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77,042 - +0.4
78,271 + GFF1433 0.45 -0.8
78,305 - GFF1433 0.50 -0.5
79,100 - GFF1434 0.35 -0.2
79,189 + GFF1434 0.41 +0.2
79,190 - GFF1434 0.41 +0.1

Or see this region's nucleotide sequence