Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1394 and GFF1395 are separated by 132 nucleotides GFF1395 and GFF1396 are separated by 344 nucleotides
GFF1394 - putative cytoplasmic protein, at 38,118 to 38,465
GFF1394
GFF1395 - Aspartokinase (EC 2.7.2.4), at 38,598 to 39,947
GFF1395
GFF1396 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 40,292 to 41,941
GFF1396
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 37.611 kb on - strand at 38.113 kb on - strand at 38.211 kb on - strand, within GFF1394 at 38.304 kb on - strand, within GFF1394 at 38.485 kb on - strand at 38.559 kb on - strand at 38.569 kb on - strand at 38.607 kb on + strand at 38.739 kb on - strand, within GFF1395 at 38.854 kb on - strand, within GFF1395 at 38.922 kb on - strand, within GFF1395 at 38.932 kb on - strand, within GFF1395 at 38.939 kb on + strand, within GFF1395 at 38.942 kb on + strand, within GFF1395 at 39.075 kb on - strand, within GFF1395 at 39.156 kb on + strand, within GFF1395 at 39.175 kb on - strand, within GFF1395 at 39.250 kb on - strand, within GFF1395 at 39.269 kb on - strand, within GFF1395 at 39.339 kb on - strand, within GFF1395 at 39.339 kb on - strand, within GFF1395 at 39.339 kb on - strand, within GFF1395 at 39.408 kb on - strand, within GFF1395 at 39.543 kb on + strand, within GFF1395 at 39.543 kb on + strand, within GFF1395 at 39.573 kb on + strand, within GFF1395 at 39.867 kb on + strand at 39.867 kb on + strand at 39.867 kb on + strand at 39.868 kb on - strand at 39.948 kb on - strand at 39.948 kb on - strand at 40.028 kb on - strand at 40.042 kb on + strand at 40.117 kb on + strand at 40.119 kb on + strand at 40.119 kb on + strand at 40.119 kb on + strand at 40.165 kb on + strand at 40.166 kb on - strand at 40.171 kb on - strand at 40.175 kb on - strand at 40.175 kb on - strand at 40.215 kb on + strand at 40.610 kb on - strand, within GFF1396 at 40.807 kb on + strand, within GFF1396
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 37,611 - +0.6 38,113 - +0.1 38,211 - GFF1394 0.27 +0.1 38,304 - GFF1394 0.53 -0.1 38,485 - -0.0 38,559 - +0.0 38,569 - +0.3 38,607 + -0.2 38,739 - GFF1395 0.10 +0.5 38,854 - GFF1395 0.19 -0.1 38,922 - GFF1395 0.24 +4.0 38,932 - GFF1395 0.25 +1.7 38,939 + GFF1395 0.25 -0.2 38,942 + GFF1395 0.25 +0.1 39,075 - GFF1395 0.35 +0.1 39,156 + GFF1395 0.41 -0.1 39,175 - GFF1395 0.43 +0.0 39,250 - GFF1395 0.48 -0.2 39,269 - GFF1395 0.50 +0.4 39,339 - GFF1395 0.55 +0.1 39,339 - GFF1395 0.55 -0.6 39,339 - GFF1395 0.55 +0.4 39,408 - GFF1395 0.60 -0.2 39,543 + GFF1395 0.70 +0.0 39,543 + GFF1395 0.70 +0.5 39,573 + GFF1395 0.72 +0.2 39,867 + -1.0 39,867 + -0.2 39,867 + +0.8 39,868 - -0.1 39,948 - -0.2 39,948 - +0.1 40,028 - +0.1 40,042 + -0.3 40,117 + +0.3 40,119 + -0.0 40,119 + -1.0 40,119 + +1.1 40,165 + -0.1 40,166 - +0.1 40,171 - -0.1 40,175 - +0.5 40,175 - +0.4 40,215 + -0.0 40,610 - GFF1396 0.19 -0.0 40,807 + GFF1396 0.31 -1.3
Or see this region's nucleotide sequence