Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1388 and GFF1389 overlap by 11 nucleotides GFF1389 and GFF1390 overlap by 4 nucleotides GFF1390 and GFF1391 are separated by 159 nucleotides GFF1391 and GFF1392 are separated by 12 nucleotides
GFF1388 - Phage tail sheath monomer, at 34,094 to 35,521
GFF1388
GFF1389 - FIG074102: hypothetical protein, at 35,511 to 35,708
GFF1389
GFF1390 - Phage protein, at 35,705 to 36,160
GFF1390
GFF1391 - Putative inner membrane protein, at 36,320 to 36,634
GFF1391
GFF1392 - Phage lysin, at 36,647 to 37,252
GFF1392
Position (kb) 35
36
37 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 34.762 kb on + strand, within GFF1388 at 34.762 kb on + strand, within GFF1388 at 34.830 kb on + strand, within GFF1388 at 34.831 kb on - strand, within GFF1388 at 34.834 kb on + strand, within GFF1388 at 34.835 kb on - strand, within GFF1388 at 35.034 kb on + strand, within GFF1388 at 35.049 kb on + strand, within GFF1388 at 35.050 kb on - strand, within GFF1388 at 35.119 kb on - strand, within GFF1388 at 35.134 kb on + strand, within GFF1388 at 35.137 kb on - strand, within GFF1388 at 35.275 kb on + strand, within GFF1388 at 35.495 kb on + strand at 35.496 kb on - strand at 35.496 kb on - strand at 35.513 kb on - strand at 35.646 kb on + strand, within GFF1389 at 35.647 kb on - strand, within GFF1389 at 35.833 kb on - strand, within GFF1390 at 35.919 kb on - strand, within GFF1390 at 35.930 kb on + strand, within GFF1390 at 35.931 kb on - strand, within GFF1390 at 36.095 kb on - strand, within GFF1390 at 36.120 kb on - strand at 36.824 kb on - strand, within GFF1392 at 36.927 kb on + strand, within GFF1392 at 36.928 kb on - strand, within GFF1392 at 37.024 kb on + strand, within GFF1392 at 37.024 kb on + strand, within GFF1392 at 37.091 kb on + strand, within GFF1392 at 37.091 kb on + strand, within GFF1392 at 37.092 kb on - strand, within GFF1392
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 34,762 + GFF1388 0.47 +0.3 34,762 + GFF1388 0.47 +0.3 34,830 + GFF1388 0.52 -0.5 34,831 - GFF1388 0.52 +0.2 34,834 + GFF1388 0.52 -3.8 34,835 - GFF1388 0.52 -0.2 35,034 + GFF1388 0.66 -0.1 35,049 + GFF1388 0.67 -0.2 35,050 - GFF1388 0.67 -0.2 35,119 - GFF1388 0.72 +0.6 35,134 + GFF1388 0.73 -0.9 35,137 - GFF1388 0.73 +0.5 35,275 + GFF1388 0.83 +0.0 35,495 + -0.0 35,496 - +0.2 35,496 - -1.0 35,513 - +0.1 35,646 + GFF1389 0.68 +0.2 35,647 - GFF1389 0.69 +0.0 35,833 - GFF1390 0.28 -0.2 35,919 - GFF1390 0.47 -1.3 35,930 + GFF1390 0.49 +0.1 35,931 - GFF1390 0.50 -0.9 36,095 - GFF1390 0.86 -0.2 36,120 - +0.1 36,824 - GFF1392 0.29 +0.0 36,927 + GFF1392 0.46 -0.2 36,928 - GFF1392 0.46 -0.2 37,024 + GFF1392 0.62 -0.2 37,024 + GFF1392 0.62 -0.1 37,091 + GFF1392 0.73 +0.1 37,091 + GFF1392 0.73 +0.2 37,092 - GFF1392 0.73 +1.9
Or see this region's nucleotide sequence