Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1371 and GFF1372 are separated by 2 nucleotides GFF1372 and GFF1373 overlap by 8 nucleotides GFF1373 and GFF1374 overlap by 10 nucleotides GFF1374 and GFF1375 are separated by 60 nucleotides GFF1375 and GFF1376 overlap by 20 nucleotides
GFF1371 - putative phage tail fiber protein H, at 20,572 to 22,317
GFF1371
GFF1372 - Putative phage tail protein, at 22,320 to 22,952
GFF1372
GFF1373 - Phage baseplate, at 22,945 to 24,060
GFF1373
GFF1374 - putative bacteriophage baseplate protein, at 24,051 to 24,410
GFF1374
GFF1375 - hypothetical protein, at 24,471 to 24,593
GFF1375
GFF1376 - putative inner membrane protein, at 24,574 to 26,112
GFF1376
Position (kb) 22
23
24
25 Strain fitness (log2 ratio) -2
-1
0
1 at 21.949 kb on - strand, within GFF1371 at 22.058 kb on + strand, within GFF1371 at 22.059 kb on - strand, within GFF1371 at 22.135 kb on - strand, within GFF1371 at 22.238 kb on - strand at 22.476 kb on - strand, within GFF1372 at 22.660 kb on - strand, within GFF1372 at 22.699 kb on + strand, within GFF1372 at 22.704 kb on - strand, within GFF1372 at 22.728 kb on + strand, within GFF1372 at 22.782 kb on + strand, within GFF1372 at 22.840 kb on + strand, within GFF1372 at 22.841 kb on - strand, within GFF1372 at 23.049 kb on - strand at 23.065 kb on + strand, within GFF1373 at 23.185 kb on - strand, within GFF1373 at 23.236 kb on - strand, within GFF1373 at 23.442 kb on - strand, within GFF1373 at 23.488 kb on - strand, within GFF1373 at 23.488 kb on - strand, within GFF1373 at 23.488 kb on - strand, within GFF1373 at 23.488 kb on - strand, within GFF1373 at 23.558 kb on + strand, within GFF1373 at 23.644 kb on + strand, within GFF1373 at 23.645 kb on - strand, within GFF1373 at 23.990 kb on + strand at 24.036 kb on + strand at 24.061 kb on - strand at 24.313 kb on - strand, within GFF1374 at 24.346 kb on + strand, within GFF1374 at 24.445 kb on - strand at 24.445 kb on - strand at 24.465 kb on + strand at 24.570 kb on - strand, within GFF1375 at 24.607 kb on + strand at 24.618 kb on - strand at 24.756 kb on + strand, within GFF1376 at 24.847 kb on + strand, within GFF1376
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 21,949 - GFF1371 0.79 -0.6 22,058 + GFF1371 0.85 +1.4 22,059 - GFF1371 0.85 +0.7 22,135 - GFF1371 0.90 +0.2 22,238 - -0.0 22,476 - GFF1372 0.25 +1.0 22,660 - GFF1372 0.54 +0.2 22,699 + GFF1372 0.60 -0.5 22,704 - GFF1372 0.61 -0.1 22,728 + GFF1372 0.64 +1.1 22,782 + GFF1372 0.73 -2.1 22,840 + GFF1372 0.82 +0.8 22,841 - GFF1372 0.82 +0.2 23,049 - +0.1 23,065 + GFF1373 0.11 +0.7 23,185 - GFF1373 0.22 -0.0 23,236 - GFF1373 0.26 +0.1 23,442 - GFF1373 0.45 -0.1 23,488 - GFF1373 0.49 +0.5 23,488 - GFF1373 0.49 -0.6 23,488 - GFF1373 0.49 -0.0 23,488 - GFF1373 0.49 +0.5 23,558 + GFF1373 0.55 +0.1 23,644 + GFF1373 0.63 +0.8 23,645 - GFF1373 0.63 +1.5 23,990 + -0.4 24,036 + +0.4 24,061 - +0.2 24,313 - GFF1374 0.73 +0.6 24,346 + GFF1374 0.82 -0.1 24,445 - +0.2 24,445 - -0.2 24,465 + +0.2 24,570 - GFF1375 0.80 +0.5 24,607 + -0.5 24,618 - -1.6 24,756 + GFF1376 0.12 -0.0 24,847 + GFF1376 0.18 +0.3
Or see this region's nucleotide sequence