Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1304 and GFF1305 overlap by 16 nucleotides GFF1305 and GFF1306 overlap by 4 nucleotides GFF1306 and GFF1307 are separated by 29 nucleotides GFF1307 and GFF1308 are separated by 48 nucleotides GFF1308 and GFF1309 overlap by 8 nucleotides GFF1309 and GFF1310 are separated by 6 nucleotides
GFF1304 - FIG004136: Prepilin peptidase dependent protein C precursor, at 14,907 to 15,227
GFF1304
GFF1305 - FIG006270: hypothetical protein, at 15,212 to 15,619
GFF1305
GFF1306 - FIG004819: Prepilin peptidase dependent protein B precursor, at 15,616 to 16,140
GFF1306
GFF1307 - Prepilin peptidase dependent protein A precursor, at 16,170 to 16,640
GFF1307
GFF1308 - FIG102772: hypothetical protein, at 16,689 to 16,832
GFF1308
GFF1309 - Thymidylate synthase (EC 2.1.1.45), at 16,825 to 17,619
GFF1309
GFF1310 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 17,626 to 18,501
GFF1310
Position (kb) 16
17 Strain fitness (log2 ratio) -1
0
1 at 15.400 kb on - strand, within GFF1305 at 15.434 kb on + strand, within GFF1305 at 15.434 kb on + strand, within GFF1305 at 15.435 kb on - strand, within GFF1305 at 15.485 kb on + strand, within GFF1305 at 15.520 kb on - strand, within GFF1305 at 15.540 kb on - strand, within GFF1305 at 15.552 kb on - strand, within GFF1305 at 15.572 kb on + strand, within GFF1305 at 15.587 kb on + strand at 15.591 kb on - strand at 15.741 kb on + strand, within GFF1306 at 15.757 kb on + strand, within GFF1306 at 15.882 kb on + strand, within GFF1306 at 15.901 kb on - strand, within GFF1306 at 16.012 kb on - strand, within GFF1306 at 16.013 kb on + strand, within GFF1306 at 16.013 kb on + strand, within GFF1306 at 16.014 kb on - strand, within GFF1306 at 16.014 kb on - strand, within GFF1306 at 16.078 kb on + strand, within GFF1306 at 16.323 kb on - strand, within GFF1307 at 16.395 kb on - strand, within GFF1307 at 16.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 15,400 - GFF1305 0.46 +0.1 15,434 + GFF1305 0.54 -0.3 15,434 + GFF1305 0.54 +1.0 15,435 - GFF1305 0.55 +0.1 15,485 + GFF1305 0.67 -0.3 15,520 - GFF1305 0.75 +0.2 15,540 - GFF1305 0.80 +1.4 15,552 - GFF1305 0.83 -0.2 15,572 + GFF1305 0.88 -0.2 15,587 + +0.0 15,591 - +0.9 15,741 + GFF1306 0.24 -0.5 15,757 + GFF1306 0.27 +0.4 15,882 + GFF1306 0.51 -1.4 15,901 - GFF1306 0.54 +0.1 16,012 - GFF1306 0.75 +0.8 16,013 + GFF1306 0.76 -0.9 16,013 + GFF1306 0.76 +0.9 16,014 - GFF1306 0.76 -0.3 16,014 - GFF1306 0.76 +0.2 16,078 + GFF1306 0.88 +0.1 16,323 - GFF1307 0.32 +0.5 16,395 - GFF1307 0.48 +0.6 16,619 + +0.1
Or see this region's nucleotide sequence