Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1292 and GFF1293 are separated by 2 nucleotides GFF1293 and GFF1294 are separated by 9 nucleotides GFF1294 and GFF1295 are separated by 108 nucleotides
GFF1292 - Phage tail length tape-measure protein 1, at 14,933 to 18,028
GFF1292
GFF1293 - Phage minor tail protein, at 18,031 to 18,360
GFF1293
GFF1294 - Phage minor tail protein, at 18,370 to 19,068
GFF1294
GFF1295 - Phage tail assembly protein, at 19,177 to 19,812
GFF1295
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 17.199 kb on - strand, within GFF1292 at 17.327 kb on + strand, within GFF1292 at 17.642 kb on + strand, within GFF1292 at 17.643 kb on - strand, within GFF1292 at 17.714 kb on + strand, within GFF1292 at 17.732 kb on - strand at 17.799 kb on + strand at 17.800 kb on - strand at 17.803 kb on - strand at 17.827 kb on + strand at 17.883 kb on - strand at 17.947 kb on - strand at 17.949 kb on - strand at 17.950 kb on + strand at 17.950 kb on + strand at 17.951 kb on - strand at 18.160 kb on + strand, within GFF1293 at 18.161 kb on - strand, within GFF1293 at 18.183 kb on + strand, within GFF1293 at 18.261 kb on + strand, within GFF1293 at 18.261 kb on + strand, within GFF1293 at 18.261 kb on + strand, within GFF1293 at 18.391 kb on - strand at 18.536 kb on - strand, within GFF1294 at 18.689 kb on + strand, within GFF1294 at 18.693 kb on - strand, within GFF1294 at 18.693 kb on - strand, within GFF1294 at 18.693 kb on - strand, within GFF1294 at 18.694 kb on + strand, within GFF1294 at 18.694 kb on + strand, within GFF1294 at 18.694 kb on + strand, within GFF1294 at 18.695 kb on - strand, within GFF1294 at 18.695 kb on - strand, within GFF1294 at 18.695 kb on - strand, within GFF1294 at 18.807 kb on - strand, within GFF1294 at 18.888 kb on + strand, within GFF1294 at 18.896 kb on + strand, within GFF1294 at 18.919 kb on + strand, within GFF1294 at 18.921 kb on + strand, within GFF1294 at 18.957 kb on + strand, within GFF1294 at 19.054 kb on - strand at 19.089 kb on + strand at 19.166 kb on - strand at 19.182 kb on + strand at 19.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 17,199 - GFF1292 0.73 -0.3 17,327 + GFF1292 0.77 +1.4 17,642 + GFF1292 0.88 -0.4 17,643 - GFF1292 0.88 -0.3 17,714 + GFF1292 0.90 +0.7 17,732 - +0.3 17,799 + +0.0 17,800 - -0.8 17,803 - -0.1 17,827 + +0.1 17,883 - -0.5 17,947 - -0.1 17,949 - -0.5 17,950 + -0.0 17,950 + -0.4 17,951 - -0.5 18,160 + GFF1293 0.39 -0.6 18,161 - GFF1293 0.39 +0.8 18,183 + GFF1293 0.46 -0.0 18,261 + GFF1293 0.70 +0.2 18,261 + GFF1293 0.70 +0.8 18,261 + GFF1293 0.70 +0.3 18,391 - -0.2 18,536 - GFF1294 0.24 -0.4 18,689 + GFF1294 0.46 -0.4 18,693 - GFF1294 0.46 -0.2 18,693 - GFF1294 0.46 -0.0 18,693 - GFF1294 0.46 -1.2 18,694 + GFF1294 0.46 +1.7 18,694 + GFF1294 0.46 +0.5 18,694 + GFF1294 0.46 -1.4 18,695 - GFF1294 0.46 +0.4 18,695 - GFF1294 0.46 -2.0 18,695 - GFF1294 0.46 +0.1 18,807 - GFF1294 0.63 +0.5 18,888 + GFF1294 0.74 -0.2 18,896 + GFF1294 0.75 +0.0 18,919 + GFF1294 0.79 -0.1 18,921 + GFF1294 0.79 +1.0 18,957 + GFF1294 0.84 -0.1 19,054 - -1.0 19,089 + +1.1 19,166 - -0.6 19,182 + -0.5 19,204 + -0.1
Or see this region's nucleotide sequence