Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1284 and GFF1285 are separated by 225 nucleotides GFF1285 and GFF1286 are separated by 3 nucleotides GFF1286 and GFF1287 are separated by 48 nucleotides GFF1287 and GFF1288 overlap by 12 nucleotides GFF1288 and GFF1289 are separated by 10 nucleotides
GFF1284 - Phage capsid and scaffold, at 10,748 to 11,131
GFF1284
GFF1285 - FIG01049612: hypothetical protein, at 11,357 to 11,560
GFF1285
GFF1286 - Phage tail completion protein, at 11,564 to 11,737
GFF1286
GFF1287 - putative virulence protein, at 11,786 to 13,036
GFF1287
GFF1288 - Phage minor tail protein, at 13,025 to 13,426
GFF1288
GFF1289 - Phage tail assembly, at 13,437 to 14,180
GFF1289
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 10.865 kb on - strand, within GFF1284 at 10.989 kb on + strand, within GFF1284 at 11.050 kb on + strand, within GFF1284 at 11.051 kb on - strand, within GFF1284 at 11.053 kb on + strand, within GFF1284 at 11.054 kb on - strand, within GFF1284 at 11.308 kb on + strand at 11.317 kb on - strand at 11.381 kb on - strand, within GFF1285 at 11.510 kb on + strand, within GFF1285 at 11.562 kb on + strand at 11.564 kb on - strand at 11.564 kb on - strand at 11.723 kb on + strand at 11.858 kb on - strand at 11.860 kb on + strand at 12.071 kb on + strand, within GFF1287 at 12.131 kb on + strand, within GFF1287 at 12.365 kb on + strand, within GFF1287 at 12.544 kb on - strand, within GFF1287 at 12.565 kb on + strand, within GFF1287 at 12.764 kb on + strand, within GFF1287 at 12.765 kb on - strand, within GFF1287 at 12.765 kb on - strand, within GFF1287 at 12.765 kb on - strand, within GFF1287 at 12.765 kb on - strand, within GFF1287 at 12.828 kb on + strand, within GFF1287 at 12.901 kb on + strand, within GFF1287 at 12.902 kb on - strand, within GFF1287 at 12.902 kb on - strand, within GFF1287 at 12.903 kb on + strand, within GFF1287 at 12.904 kb on - strand, within GFF1287 at 12.963 kb on - strand at 13.041 kb on + strand at 13.042 kb on - strand at 13.042 kb on - strand at 13.122 kb on + strand, within GFF1288 at 13.123 kb on - strand, within GFF1288 at 13.172 kb on + strand, within GFF1288 at 13.173 kb on - strand, within GFF1288 at 13.173 kb on - strand, within GFF1288 at 13.173 kb on - strand, within GFF1288 at 13.173 kb on - strand, within GFF1288 at 13.174 kb on + strand, within GFF1288 at 13.174 kb on + strand, within GFF1288 at 13.174 kb on + strand, within GFF1288 at 13.175 kb on - strand, within GFF1288 at 13.184 kb on - strand, within GFF1288 at 13.349 kb on + strand, within GFF1288 at 13.415 kb on + strand at 13.416 kb on - strand at 13.433 kb on + strand at 13.434 kb on - strand at 13.434 kb on - strand at 13.494 kb on + strand at 13.495 kb on - strand at 13.559 kb on + strand, within GFF1289 at 13.611 kb on + strand, within GFF1289 at 13.611 kb on + strand, within GFF1289 at 13.858 kb on + strand, within GFF1289 at 13.902 kb on - strand, within GFF1289 at 13.902 kb on - strand, within GFF1289 at 13.913 kb on - strand, within GFF1289
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 10,865 - GFF1284 0.30 +0.2 10,989 + GFF1284 0.63 -0.3 11,050 + GFF1284 0.79 +2.4 11,051 - GFF1284 0.79 -0.5 11,053 + GFF1284 0.79 -2.5 11,054 - GFF1284 0.80 -0.7 11,308 + -0.4 11,317 - +0.0 11,381 - GFF1285 0.12 +0.0 11,510 + GFF1285 0.75 +0.8 11,562 + +0.2 11,564 - +0.4 11,564 - +0.2 11,723 + +0.2 11,858 - -1.0 11,860 + -0.8 12,071 + GFF1287 0.23 +0.9 12,131 + GFF1287 0.28 +0.1 12,365 + GFF1287 0.46 +0.0 12,544 - GFF1287 0.61 -0.3 12,565 + GFF1287 0.62 -0.8 12,764 + GFF1287 0.78 +0.1 12,765 - GFF1287 0.78 +0.7 12,765 - GFF1287 0.78 -0.3 12,765 - GFF1287 0.78 +0.4 12,765 - GFF1287 0.78 +1.1 12,828 + GFF1287 0.83 +0.7 12,901 + GFF1287 0.89 -0.7 12,902 - GFF1287 0.89 +0.5 12,902 - GFF1287 0.89 -0.0 12,903 + GFF1287 0.89 +0.2 12,904 - GFF1287 0.89 +0.1 12,963 - +0.1 13,041 + -1.6 13,042 - -0.5 13,042 - +1.1 13,122 + GFF1288 0.24 +0.1 13,123 - GFF1288 0.24 -0.4 13,172 + GFF1288 0.37 +0.4 13,173 - GFF1288 0.37 -0.6 13,173 - GFF1288 0.37 +0.2 13,173 - GFF1288 0.37 +1.1 13,173 - GFF1288 0.37 +0.5 13,174 + GFF1288 0.37 +0.6 13,174 + GFF1288 0.37 +0.1 13,174 + GFF1288 0.37 -0.9 13,175 - GFF1288 0.37 -0.3 13,184 - GFF1288 0.40 -0.6 13,349 + GFF1288 0.81 +0.3 13,415 + -0.1 13,416 - -1.0 13,433 + -0.7 13,434 - -0.2 13,434 - -0.3 13,494 + +0.9 13,495 - +0.8 13,559 + GFF1289 0.16 -0.0 13,611 + GFF1289 0.23 -0.2 13,611 + GFF1289 0.23 -0.2 13,858 + GFF1289 0.57 -0.2 13,902 - GFF1289 0.62 +0.5 13,902 - GFF1289 0.62 -0.6 13,913 - GFF1289 0.64 -1.3
Or see this region's nucleotide sequence