Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1144 and GFF1145 are separated by 42 nucleotides GFF1145 and GFF1146 overlap by 4 nucleotides GFF1146 and GFF1147 are separated by 34 nucleotides GFF1147 and GFF1148 are separated by 73 nucleotides
GFF1144 - FIG00732614: hypothetical protein, at 1,569 to 3,566
GFF1144
GFF1145 - PsiB protein, at 3,609 to 4,040
GFF1145
GFF1146 - PsiA protein, at 4,037 to 4,774
GFF1146
GFF1147 - hypothetical protein, at 4,809 to 4,937
GFF1147
GFF1148 - FIG01049080: hypothetical protein, at 5,011 to 5,181
GFF1148
Position (kb) 3
4
5 Strain fitness (log2 ratio) -1
0
1 at 2.821 kb on + strand, within GFF1144 at 3.021 kb on - strand, within GFF1144 at 3.216 kb on - strand, within GFF1144 at 3.502 kb on + strand at 3.502 kb on + strand at 3.503 kb on - strand at 3.503 kb on - strand at 3.568 kb on - strand at 3.621 kb on - strand at 3.641 kb on + strand at 3.641 kb on + strand at 3.641 kb on + strand at 3.641 kb on + strand at 3.855 kb on - strand, within GFF1145 at 3.881 kb on + strand, within GFF1145 at 3.881 kb on + strand, within GFF1145 at 3.945 kb on - strand, within GFF1145 at 3.953 kb on + strand, within GFF1145 at 3.953 kb on + strand, within GFF1145 at 3.991 kb on - strand, within GFF1145 at 4.093 kb on - strand at 4.220 kb on - strand, within GFF1146 at 4.220 kb on - strand, within GFF1146 at 4.313 kb on + strand, within GFF1146 at 4.314 kb on - strand, within GFF1146 at 4.368 kb on + strand, within GFF1146 at 4.369 kb on - strand, within GFF1146 at 4.502 kb on - strand, within GFF1146 at 4.536 kb on - strand, within GFF1146 at 4.538 kb on - strand, within GFF1146 at 4.607 kb on - strand, within GFF1146 at 4.667 kb on + strand, within GFF1146 at 4.703 kb on + strand at 4.703 kb on + strand at 4.703 kb on + strand at 4.703 kb on + strand at 4.703 kb on + strand at 4.703 kb on + strand at 4.704 kb on - strand at 4.704 kb on - strand at 4.704 kb on - strand at 4.704 kb on - strand at 4.889 kb on + strand, within GFF1147 at 4.889 kb on + strand, within GFF1147 at 4.889 kb on + strand, within GFF1147 at 4.889 kb on + strand, within GFF1147 at 4.889 kb on + strand, within GFF1147 at 4.890 kb on - strand, within GFF1147 at 4.890 kb on - strand, within GFF1147 at 4.890 kb on - strand, within GFF1147 at 4.990 kb on + strand at 5.039 kb on + strand, within GFF1148
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 2,821 + GFF1144 0.63 -1.4 3,021 - GFF1144 0.73 -0.1 3,216 - GFF1144 0.82 -0.0 3,502 + -0.1 3,502 + -0.3 3,503 - +0.3 3,503 - -0.2 3,568 - -0.3 3,621 - +0.3 3,641 + -0.2 3,641 + +0.3 3,641 + +0.6 3,641 + -0.0 3,855 - GFF1145 0.57 +0.2 3,881 + GFF1145 0.63 -0.0 3,881 + GFF1145 0.63 +0.1 3,945 - GFF1145 0.78 +0.3 3,953 + GFF1145 0.80 -0.1 3,953 + GFF1145 0.80 +0.3 3,991 - GFF1145 0.88 +0.3 4,093 - +0.1 4,220 - GFF1146 0.25 -0.8 4,220 - GFF1146 0.25 -0.0 4,313 + GFF1146 0.37 -0.1 4,314 - GFF1146 0.38 +0.2 4,368 + GFF1146 0.45 -0.1 4,369 - GFF1146 0.45 -0.1 4,502 - GFF1146 0.63 +0.5 4,536 - GFF1146 0.68 -0.1 4,538 - GFF1146 0.68 -1.5 4,607 - GFF1146 0.77 +0.7 4,667 + GFF1146 0.85 -0.0 4,703 + +0.6 4,703 + -0.3 4,703 + -0.2 4,703 + -0.4 4,703 + -0.1 4,703 + +0.1 4,704 - -0.4 4,704 - -0.7 4,704 - +0.2 4,704 - +0.0 4,889 + GFF1147 0.62 +0.3 4,889 + GFF1147 0.62 -0.9 4,889 + GFF1147 0.62 +0.4 4,889 + GFF1147 0.62 +0.4 4,889 + GFF1147 0.62 -0.1 4,890 - GFF1147 0.63 -0.1 4,890 - GFF1147 0.63 +0.1 4,890 - GFF1147 0.63 -0.0 4,990 + +0.2 5,039 + GFF1148 0.16 +0.6
Or see this region's nucleotide sequence