Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1120 and GFF1121 are separated by 54 nucleotides GFF1121 and GFF1122 are separated by 39 nucleotides
GFF1120 - Transcriptional activator NhaR, at 308,202 to 309,101
GFF1120
GFF1121 - Alpha-xylosidase (EC 3.2.1.-), at 309,156 to 311,195
GFF1121
GFF1122 - Xyloside transporter XynT, at 311,235 to 312,608
GFF1122
Position (kb) 309
310
311
312 Strain fitness (log2 ratio) -1
0
1 at 308.217 kb on - strand at 308.223 kb on + strand at 308.223 kb on + strand at 308.236 kb on - strand at 308.253 kb on + strand at 308.253 kb on + strand at 308.366 kb on + strand, within GFF1120 at 308.367 kb on - strand, within GFF1120 at 308.432 kb on + strand, within GFF1120 at 308.573 kb on - strand, within GFF1120 at 308.645 kb on + strand, within GFF1120 at 308.887 kb on + strand, within GFF1120 at 309.009 kb on + strand, within GFF1120 at 309.009 kb on + strand, within GFF1120 at 309.090 kb on - strand at 309.099 kb on + strand at 309.100 kb on - strand at 309.100 kb on - strand at 309.106 kb on - strand at 309.178 kb on + strand at 309.197 kb on + strand at 309.229 kb on + strand at 309.253 kb on + strand at 309.321 kb on - strand at 309.525 kb on + strand, within GFF1121 at 309.526 kb on - strand, within GFF1121 at 309.707 kb on + strand, within GFF1121 at 309.750 kb on + strand, within GFF1121 at 309.803 kb on + strand, within GFF1121 at 309.803 kb on + strand, within GFF1121 at 309.818 kb on + strand, within GFF1121 at 309.934 kb on + strand, within GFF1121 at 309.934 kb on + strand, within GFF1121 at 309.938 kb on + strand, within GFF1121 at 309.938 kb on + strand, within GFF1121 at 309.938 kb on + strand, within GFF1121 at 309.938 kb on + strand, within GFF1121 at 309.938 kb on + strand, within GFF1121 at 309.938 kb on + strand, within GFF1121 at 309.939 kb on - strand, within GFF1121 at 309.946 kb on + strand, within GFF1121 at 309.950 kb on + strand, within GFF1121 at 309.951 kb on - strand, within GFF1121 at 309.951 kb on - strand, within GFF1121 at 309.997 kb on + strand, within GFF1121 at 310.003 kb on + strand, within GFF1121 at 310.033 kb on - strand, within GFF1121 at 310.064 kb on - strand, within GFF1121 at 310.123 kb on + strand, within GFF1121 at 310.131 kb on - strand, within GFF1121 at 310.148 kb on + strand, within GFF1121 at 310.374 kb on - strand, within GFF1121 at 310.393 kb on + strand, within GFF1121 at 310.550 kb on - strand, within GFF1121 at 310.662 kb on - strand, within GFF1121 at 310.754 kb on - strand, within GFF1121 at 310.946 kb on + strand, within GFF1121 at 310.976 kb on + strand, within GFF1121 at 311.187 kb on - strand at 311.187 kb on - strand at 311.288 kb on - strand at 311.348 kb on + strand at 311.474 kb on + strand, within GFF1122 at 311.475 kb on - strand, within GFF1122 at 311.475 kb on - strand, within GFF1122 at 311.507 kb on + strand, within GFF1122 at 311.510 kb on + strand, within GFF1122 at 311.688 kb on + strand, within GFF1122 at 311.708 kb on - strand, within GFF1122 at 311.800 kb on + strand, within GFF1122 at 311.891 kb on + strand, within GFF1122 at 312.006 kb on - strand, within GFF1122
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 308,217 - +0.1 308,223 + +0.2 308,223 + +0.8 308,236 - +0.1 308,253 + -0.5 308,253 + +0.1 308,366 + GFF1120 0.18 +0.8 308,367 - GFF1120 0.18 -0.0 308,432 + GFF1120 0.26 +0.0 308,573 - GFF1120 0.41 -0.4 308,645 + GFF1120 0.49 +0.1 308,887 + GFF1120 0.76 +0.7 309,009 + GFF1120 0.90 -0.5 309,009 + GFF1120 0.90 -0.3 309,090 - -0.1 309,099 + -0.2 309,100 - +0.2 309,100 - +0.0 309,106 - +0.7 309,178 + -0.4 309,197 + +0.1 309,229 + -0.4 309,253 + +0.3 309,321 - +0.2 309,525 + GFF1121 0.18 +0.0 309,526 - GFF1121 0.18 -0.5 309,707 + GFF1121 0.27 -0.4 309,750 + GFF1121 0.29 -0.6 309,803 + GFF1121 0.32 -0.7 309,803 + GFF1121 0.32 -0.3 309,818 + GFF1121 0.32 -1.0 309,934 + GFF1121 0.38 -0.4 309,934 + GFF1121 0.38 -0.4 309,938 + GFF1121 0.38 +0.4 309,938 + GFF1121 0.38 +0.0 309,938 + GFF1121 0.38 -0.3 309,938 + GFF1121 0.38 -0.1 309,938 + GFF1121 0.38 +0.2 309,938 + GFF1121 0.38 +0.4 309,939 - GFF1121 0.38 -0.5 309,946 + GFF1121 0.39 -0.8 309,950 + GFF1121 0.39 +0.8 309,951 - GFF1121 0.39 -1.1 309,951 - GFF1121 0.39 -0.1 309,997 + GFF1121 0.41 -0.5 310,003 + GFF1121 0.42 -0.3 310,033 - GFF1121 0.43 -0.3 310,064 - GFF1121 0.45 -0.0 310,123 + GFF1121 0.47 -0.2 310,131 - GFF1121 0.48 -0.0 310,148 + GFF1121 0.49 -0.7 310,374 - GFF1121 0.60 +0.2 310,393 + GFF1121 0.61 +0.2 310,550 - GFF1121 0.68 -1.0 310,662 - GFF1121 0.74 +0.3 310,754 - GFF1121 0.78 -0.1 310,946 + GFF1121 0.88 -0.0 310,976 + GFF1121 0.89 -0.2 311,187 - -0.8 311,187 - -0.2 311,288 - +0.3 311,348 + +0.1 311,474 + GFF1122 0.17 +0.2 311,475 - GFF1122 0.17 +0.0 311,475 - GFF1122 0.17 +0.7 311,507 + GFF1122 0.20 -0.3 311,510 + GFF1122 0.20 +0.3 311,688 + GFF1122 0.33 -0.2 311,708 - GFF1122 0.34 -0.0 311,800 + GFF1122 0.41 +0.7 311,891 + GFF1122 0.48 -0.1 312,006 - GFF1122 0.56 +1.2
Or see this region's nucleotide sequence