Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1046 and GFF1047 are separated by 37 nucleotides GFF1047 and GFF1048 overlap by 4 nucleotides GFF1048 and GFF1049 are separated by 13 nucleotides GFF1049 and GFF1050 are separated by 77 nucleotides
GFF1046 - Purine nucleoside phosphorylase (EC 2.4.2.1), at 228,493 to 229,212
GFF1046
GFF1047 - Beta-fimbriae probable major subunit, at 229,250 to 229,822
GFF1047
GFF1048 - Beta-fimbriae usher protein, at 229,819 to 232,227
GFF1048
GFF1049 - Beta-fimbriae chaperone protein, at 232,241 to 232,948
GFF1049
GFF1050 - Beta-fimbriae probable major subunit, at 233,026 to 233,715
GFF1050
Position (kb) 229
230
231
232
233 Strain fitness (log2 ratio) -1
0
1
2 at 228.855 kb on + strand, within GFF1046 at 228.974 kb on - strand, within GFF1046 at 229.028 kb on + strand, within GFF1046 at 229.047 kb on + strand, within GFF1046 at 229.117 kb on - strand, within GFF1046 at 229.204 kb on - strand at 229.286 kb on + strand at 229.286 kb on + strand at 229.286 kb on + strand at 229.287 kb on - strand at 229.287 kb on - strand at 229.341 kb on - strand, within GFF1047 at 229.385 kb on - strand, within GFF1047 at 229.388 kb on - strand, within GFF1047 at 229.411 kb on + strand, within GFF1047 at 229.411 kb on + strand, within GFF1047 at 229.419 kb on - strand, within GFF1047 at 229.489 kb on - strand, within GFF1047 at 229.502 kb on + strand, within GFF1047 at 229.503 kb on - strand, within GFF1047 at 229.597 kb on + strand, within GFF1047 at 229.597 kb on + strand, within GFF1047 at 229.767 kb on - strand at 229.781 kb on - strand at 229.787 kb on + strand at 229.787 kb on + strand at 229.789 kb on + strand at 229.789 kb on + strand at 229.928 kb on - strand at 229.992 kb on - strand at 229.996 kb on - strand at 230.009 kb on - strand at 230.009 kb on - strand at 230.053 kb on + strand at 230.053 kb on + strand at 230.179 kb on - strand, within GFF1048 at 230.317 kb on - strand, within GFF1048 at 230.329 kb on - strand, within GFF1048 at 230.330 kb on + strand, within GFF1048 at 230.514 kb on - strand, within GFF1048 at 230.544 kb on + strand, within GFF1048 at 230.586 kb on + strand, within GFF1048 at 230.588 kb on + strand, within GFF1048 at 230.589 kb on - strand, within GFF1048 at 230.612 kb on - strand, within GFF1048 at 230.612 kb on - strand, within GFF1048 at 230.641 kb on - strand, within GFF1048 at 230.653 kb on - strand, within GFF1048 at 230.749 kb on - strand, within GFF1048 at 230.790 kb on - strand, within GFF1048 at 230.808 kb on + strand, within GFF1048 at 230.809 kb on - strand, within GFF1048 at 230.835 kb on + strand, within GFF1048 at 230.865 kb on - strand, within GFF1048 at 230.938 kb on - strand, within GFF1048 at 230.969 kb on - strand, within GFF1048 at 231.046 kb on - strand, within GFF1048 at 231.086 kb on + strand, within GFF1048 at 231.196 kb on + strand, within GFF1048 at 231.197 kb on - strand, within GFF1048 at 231.197 kb on - strand, within GFF1048 at 231.197 kb on - strand, within GFF1048 at 231.218 kb on - strand, within GFF1048 at 231.310 kb on - strand, within GFF1048 at 231.352 kb on - strand, within GFF1048 at 231.435 kb on + strand, within GFF1048 at 231.449 kb on - strand, within GFF1048 at 231.486 kb on + strand, within GFF1048 at 231.520 kb on + strand, within GFF1048 at 231.594 kb on + strand, within GFF1048 at 231.594 kb on + strand, within GFF1048 at 231.595 kb on - strand, within GFF1048 at 231.595 kb on - strand, within GFF1048 at 231.595 kb on - strand, within GFF1048 at 231.595 kb on - strand, within GFF1048 at 231.598 kb on + strand, within GFF1048 at 231.599 kb on - strand, within GFF1048 at 231.599 kb on - strand, within GFF1048 at 231.627 kb on + strand, within GFF1048 at 231.673 kb on + strand, within GFF1048 at 231.751 kb on - strand, within GFF1048 at 231.757 kb on - strand, within GFF1048 at 231.799 kb on + strand, within GFF1048 at 231.802 kb on + strand, within GFF1048 at 231.808 kb on - strand, within GFF1048 at 231.870 kb on + strand, within GFF1048 at 231.896 kb on - strand, within GFF1048 at 232.058 kb on - strand at 232.202 kb on + strand at 232.202 kb on + strand at 232.203 kb on - strand at 232.203 kb on - strand at 232.203 kb on - strand at 232.203 kb on - strand at 232.205 kb on - strand at 232.340 kb on - strand, within GFF1049 at 232.511 kb on - strand, within GFF1049 at 232.541 kb on + strand, within GFF1049 at 232.630 kb on - strand, within GFF1049 at 232.673 kb on + strand, within GFF1049 at 232.766 kb on - strand, within GFF1049 at 233.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 228,855 + GFF1046 0.50 +0.4 228,974 - GFF1046 0.67 +1.0 229,028 + GFF1046 0.74 +0.1 229,047 + GFF1046 0.77 +0.1 229,117 - GFF1046 0.87 -0.1 229,204 - -0.1 229,286 + -0.2 229,286 + +0.2 229,286 + -0.1 229,287 - +0.1 229,287 - +0.0 229,341 - GFF1047 0.16 +0.3 229,385 - GFF1047 0.24 +0.1 229,388 - GFF1047 0.24 -1.6 229,411 + GFF1047 0.28 +0.4 229,411 + GFF1047 0.28 -0.3 229,419 - GFF1047 0.29 +0.3 229,489 - GFF1047 0.42 +0.0 229,502 + GFF1047 0.44 +0.4 229,503 - GFF1047 0.44 +0.2 229,597 + GFF1047 0.61 +0.3 229,597 + GFF1047 0.61 +0.2 229,767 - +0.6 229,781 - +2.3 229,787 + -0.3 229,787 + +0.1 229,789 + +1.1 229,789 + +0.2 229,928 - +0.9 229,992 - -0.4 229,996 - +0.3 230,009 - +0.3 230,009 - +0.2 230,053 + -1.0 230,053 + +1.7 230,179 - GFF1048 0.15 -0.1 230,317 - GFF1048 0.21 +0.2 230,329 - GFF1048 0.21 +0.8 230,330 + GFF1048 0.21 -1.7 230,514 - GFF1048 0.29 -0.1 230,544 + GFF1048 0.30 +0.1 230,586 + GFF1048 0.32 -0.4 230,588 + GFF1048 0.32 -0.1 230,589 - GFF1048 0.32 -0.1 230,612 - GFF1048 0.33 -0.2 230,612 - GFF1048 0.33 -0.5 230,641 - GFF1048 0.34 +0.0 230,653 - GFF1048 0.35 +0.5 230,749 - GFF1048 0.39 -0.1 230,790 - GFF1048 0.40 +0.2 230,808 + GFF1048 0.41 -0.2 230,809 - GFF1048 0.41 +0.2 230,835 + GFF1048 0.42 -1.2 230,865 - GFF1048 0.43 +0.0 230,938 - GFF1048 0.46 +0.1 230,969 - GFF1048 0.48 -0.1 231,046 - GFF1048 0.51 +0.2 231,086 + GFF1048 0.53 -0.6 231,196 + GFF1048 0.57 -0.5 231,197 - GFF1048 0.57 +0.4 231,197 - GFF1048 0.57 +0.2 231,197 - GFF1048 0.57 +1.3 231,218 - GFF1048 0.58 -0.4 231,310 - GFF1048 0.62 -0.2 231,352 - GFF1048 0.64 +0.5 231,435 + GFF1048 0.67 -0.2 231,449 - GFF1048 0.68 -0.3 231,486 + GFF1048 0.69 +0.0 231,520 + GFF1048 0.71 +0.6 231,594 + GFF1048 0.74 -0.1 231,594 + GFF1048 0.74 +0.4 231,595 - GFF1048 0.74 +0.2 231,595 - GFF1048 0.74 +0.1 231,595 - GFF1048 0.74 +0.7 231,595 - GFF1048 0.74 -0.1 231,598 + GFF1048 0.74 -0.3 231,599 - GFF1048 0.74 -0.3 231,599 - GFF1048 0.74 -0.0 231,627 + GFF1048 0.75 +0.0 231,673 + GFF1048 0.77 -0.1 231,751 - GFF1048 0.80 -0.3 231,757 - GFF1048 0.80 +0.0 231,799 + GFF1048 0.82 -0.2 231,802 + GFF1048 0.82 +0.3 231,808 - GFF1048 0.83 -0.5 231,870 + GFF1048 0.85 -0.3 231,896 - GFF1048 0.86 +0.0 232,058 - -1.5 232,202 + -0.4 232,202 + -1.0 232,203 - -0.3 232,203 - -0.0 232,203 - +0.2 232,203 - +0.5 232,205 - -0.0 232,340 - GFF1049 0.14 -0.3 232,511 - GFF1049 0.38 -0.0 232,541 + GFF1049 0.42 -0.2 232,630 - GFF1049 0.55 -0.1 232,673 + GFF1049 0.61 -0.1 232,766 - GFF1049 0.74 -1.4 233,038 - +0.3
Or see this region's nucleotide sequence