Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1039 and GFF1040 overlap by 4 nucleotides GFF1040 and GFF1041 are separated by 32 nucleotides GFF1041 and GFF1042 are separated by 100 nucleotides
GFF1039 - FIG00638703: hypothetical protein, at 220,262 to 221,335
GFF1039
GFF1040 - Putative deoxyribonuclease YjjV, at 221,332 to 222,105
GFF1040
GFF1041 - radical activating enzyme, at 222,138 to 222,872
GFF1041
GFF1042 - FIG00638118: hypothetical protein, at 222,973 to 224,523
GFF1042
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.148 kb on - strand, within GFF1039 at 221.203 kb on + strand, within GFF1039 at 221.203 kb on + strand, within GFF1039 at 221.203 kb on + strand, within GFF1039 at 221.346 kb on + strand at 221.352 kb on + strand at 221.382 kb on + strand at 221.959 kb on - strand, within GFF1040 at 222.073 kb on + strand at 222.074 kb on - strand at 222.088 kb on - strand at 222.140 kb on - strand at 222.145 kb on + strand at 222.145 kb on + strand at 222.422 kb on + strand, within GFF1041 at 222.423 kb on - strand, within GFF1041 at 222.489 kb on + strand, within GFF1041 at 222.489 kb on + strand, within GFF1041 at 222.490 kb on - strand, within GFF1041 at 222.510 kb on + strand, within GFF1041 at 222.545 kb on + strand, within GFF1041 at 222.657 kb on - strand, within GFF1041 at 222.686 kb on + strand, within GFF1041 at 222.792 kb on + strand, within GFF1041 at 222.793 kb on - strand, within GFF1041 at 222.919 kb on - strand at 222.975 kb on - strand at 222.981 kb on + strand at 222.982 kb on - strand at 222.982 kb on - strand at 223.071 kb on + strand at 223.125 kb on + strand at 223.126 kb on - strand at 223.126 kb on - strand at 223.126 kb on - strand at 223.126 kb on - strand at 223.565 kb on + strand, within GFF1042 at 223.566 kb on - strand, within GFF1042 at 223.566 kb on - strand, within GFF1042 at 223.566 kb on - strand, within GFF1042 at 223.627 kb on - strand, within GFF1042 at 223.700 kb on + strand, within GFF1042 at 223.714 kb on - strand, within GFF1042 at 223.741 kb on - strand, within GFF1042 at 223.774 kb on + strand, within GFF1042 at 223.815 kb on - strand, within GFF1042
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 221,148 - GFF1039 0.82 +0.3 221,203 + GFF1039 0.88 -0.7 221,203 + GFF1039 0.88 +0.1 221,203 + GFF1039 0.88 -0.5 221,346 + +0.4 221,352 + -0.3 221,382 + +0.2 221,959 - GFF1040 0.81 +0.3 222,073 + -0.3 222,074 - -0.6 222,088 - -1.2 222,140 - +1.7 222,145 + -0.1 222,145 + +0.1 222,422 + GFF1041 0.39 -0.2 222,423 - GFF1041 0.39 -0.3 222,489 + GFF1041 0.48 -1.9 222,489 + GFF1041 0.48 -0.2 222,490 - GFF1041 0.48 -0.4 222,510 + GFF1041 0.51 +0.3 222,545 + GFF1041 0.55 +0.5 222,657 - GFF1041 0.71 -0.6 222,686 + GFF1041 0.75 +0.1 222,792 + GFF1041 0.89 +0.2 222,793 - GFF1041 0.89 +1.0 222,919 - -0.5 222,975 - -0.3 222,981 + +0.2 222,982 - +0.6 222,982 - +0.6 223,071 + -0.2 223,125 + +0.0 223,126 - +1.5 223,126 - -1.1 223,126 - -0.1 223,126 - -0.4 223,565 + GFF1042 0.38 +0.3 223,566 - GFF1042 0.38 -0.2 223,566 - GFF1042 0.38 +2.0 223,566 - GFF1042 0.38 +0.9 223,627 - GFF1042 0.42 +0.2 223,700 + GFF1042 0.47 +0.3 223,714 - GFF1042 0.48 -0.3 223,741 - GFF1042 0.50 -0.3 223,774 + GFF1042 0.52 -2.4 223,815 - GFF1042 0.54 -0.1
Or see this region's nucleotide sequence