Experiment: LB Aerobic with Doxycycline hyclate 0.00000625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliB and yliC are separated by 17 nucleotides yliC and yliD are separated by 2 nucleotides
b0830: yliB - predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 868,634 to 870,172
yliB
b0831: yliC - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 870,190 to 871,110
yliC
b0832: yliD - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 871,113 to 872,024
yliD
Position (kb) 870
871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 869.192 kb on - strand, within yliB at 869.437 kb on + strand, within yliB at 869.601 kb on + strand, within yliB at 869.614 kb on + strand, within yliB at 869.670 kb on + strand, within yliB at 869.681 kb on + strand, within yliB at 869.743 kb on - strand, within yliB at 869.748 kb on - strand, within yliB at 869.845 kb on + strand, within yliB at 869.853 kb on - strand, within yliB at 869.909 kb on + strand, within yliB at 870.102 kb on + strand at 870.136 kb on - strand at 870.209 kb on - strand at 870.209 kb on - strand at 870.274 kb on + strand at 870.347 kb on - strand, within yliC at 870.379 kb on - strand, within yliC at 870.411 kb on - strand, within yliC at 870.426 kb on + strand, within yliC at 870.590 kb on - strand, within yliC at 870.598 kb on - strand, within yliC at 870.796 kb on + strand, within yliC at 870.852 kb on - strand, within yliC at 870.883 kb on - strand, within yliC at 870.923 kb on + strand, within yliC at 871.104 kb on - strand at 871.104 kb on - strand at 871.111 kb on + strand at 871.111 kb on + strand at 871.168 kb on + strand at 871.168 kb on + strand at 871.188 kb on - strand at 871.363 kb on - strand, within yliD at 871.363 kb on - strand, within yliD at 871.368 kb on - strand, within yliD at 871.381 kb on + strand, within yliD at 871.381 kb on + strand, within yliD at 871.589 kb on + strand, within yliD at 871.678 kb on + strand, within yliD at 871.691 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.722 kb on - strand, within yliD at 871.722 kb on - strand, within yliD at 871.757 kb on + strand, within yliD at 871.757 kb on + strand, within yliD at 871.765 kb on - strand, within yliD at 871.765 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.857 kb on - strand, within yliD at 871.863 kb on + strand, within yliD at 871.864 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.877 kb on - strand, within yliD at 871.877 kb on - strand, within yliD at 871.881 kb on + strand, within yliD at 871.881 kb on + strand, within yliD at 871.890 kb on - strand, within yliD at 871.902 kb on + strand, within yliD at 871.986 kb on + strand at 871.986 kb on + strand at 871.987 kb on + strand at 871.987 kb on + strand at 872.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Doxycycline hyclate 0.00000625 mM remove 869,192 - yliB b0830 0.36 -0.7 869,437 + yliB b0830 0.52 -0.2 869,601 + yliB b0830 0.63 +0.4 869,614 + yliB b0830 0.64 -0.4 869,670 + yliB b0830 0.67 +0.4 869,681 + yliB b0830 0.68 -0.7 869,743 - yliB b0830 0.72 -0.3 869,748 - yliB b0830 0.72 -1.4 869,845 + yliB b0830 0.79 +0.2 869,853 - yliB b0830 0.79 -1.5 869,909 + yliB b0830 0.83 +0.7 870,102 + -1.5 870,136 - -1.4 870,209 - -0.5 870,209 - -0.0 870,274 + -0.1 870,347 - yliC b0831 0.17 -1.4 870,379 - yliC b0831 0.21 -0.0 870,411 - yliC b0831 0.24 -0.1 870,426 + yliC b0831 0.26 -1.9 870,590 - yliC b0831 0.43 -0.5 870,598 - yliC b0831 0.44 -0.6 870,796 + yliC b0831 0.66 -0.4 870,852 - yliC b0831 0.72 -1.0 870,883 - yliC b0831 0.75 -2.9 870,923 + yliC b0831 0.80 -0.3 871,104 - +0.9 871,104 - +1.9 871,111 + -0.3 871,111 + -0.7 871,168 + -1.1 871,168 + +0.2 871,188 - -0.9 871,363 - yliD b0832 0.27 -0.5 871,363 - yliD b0832 0.27 +1.5 871,368 - yliD b0832 0.28 +0.3 871,381 + yliD b0832 0.29 -0.5 871,381 + yliD b0832 0.29 -1.5 871,589 + yliD b0832 0.52 +0.1 871,678 + yliD b0832 0.62 -0.5 871,691 + yliD b0832 0.63 +0.1 871,714 + yliD b0832 0.66 +0.5 871,714 + yliD b0832 0.66 +0.5 871,722 - yliD b0832 0.67 -0.1 871,722 - yliD b0832 0.67 +0.3 871,757 + yliD b0832 0.71 -0.1 871,757 + yliD b0832 0.71 +1.0 871,765 - yliD b0832 0.71 +0.1 871,765 - yliD b0832 0.71 +2.5 871,779 - yliD b0832 0.73 +0.9 871,779 - yliD b0832 0.73 +0.4 871,779 - yliD b0832 0.73 +0.1 871,779 - yliD b0832 0.73 -1.1 871,794 - yliD b0832 0.75 +0.9 871,794 - yliD b0832 0.75 +0.9 871,857 - yliD b0832 0.82 +0.5 871,863 + yliD b0832 0.82 +0.9 871,864 + yliD b0832 0.82 -0.5 871,869 + yliD b0832 0.83 -1.5 871,869 + yliD b0832 0.83 +0.0 871,877 - yliD b0832 0.84 -2.3 871,877 - yliD b0832 0.84 -0.7 871,881 + yliD b0832 0.84 +0.1 871,881 + yliD b0832 0.84 -1.9 871,890 - yliD b0832 0.85 +1.9 871,902 + yliD b0832 0.87 +0.5 871,986 + -1.7 871,986 + +1.3 871,987 + -0.5 871,987 + -0.0 872,088 - +0.9
Or see this region's nucleotide sequence