Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF911

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF909 and GFF910 are separated by 22 nucleotidesGFF910 and GFF911 are separated by 11 nucleotidesGFF911 and GFF912 are separated by 58 nucleotides GFF909 - FIG074102: hypothetical protein, at 88,004 to 88,306 GFF909 GFF910 - Putative inner membrane protein, at 88,329 to 89,105 GFF910 GFF911 - Putative inner membrane protein, at 89,117 to 89,761 GFF911 GFF912 - Metallo-dependent hydrolases, subgroup B, at 89,820 to 90,953 GFF912 Position (kb) 89 90Strain fitness (log2 ratio) -2 -1 0 1 2at 88.123 kb on + strand, within GFF909at 88.128 kb on + strand, within GFF909at 88.128 kb on + strand, within GFF909at 88.136 kb on - strand, within GFF909at 88.229 kb on + strand, within GFF909at 88.230 kb on - strand, within GFF909at 88.343 kb on - strandat 88.448 kb on + strand, within GFF910at 88.688 kb on - strand, within GFF910at 88.928 kb on + strand, within GFF910at 89.207 kb on - strand, within GFF911at 89.210 kb on + strand, within GFF911at 89.211 kb on - strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.214 kb on - strand, within GFF911at 89.214 kb on - strand, within GFF911at 89.219 kb on + strand, within GFF911at 89.237 kb on - strand, within GFF911at 89.498 kb on + strand, within GFF911at 89.518 kb on + strand, within GFF911at 89.678 kb on + strand, within GFF911at 89.678 kb on + strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.759 kb on + strandat 89.759 kb on + strandat 89.830 kb on + strandat 89.830 kb on + strandat 89.870 kb on + strandat 89.871 kb on - strandat 89.873 kb on + strandat 89.874 kb on - strandat 90.096 kb on - strand, within GFF912at 90.142 kb on - strand, within GFF912at 90.173 kb on + strand, within GFF912at 90.174 kb on - strand, within GFF912at 90.254 kb on + strand, within GFF912at 90.367 kb on + strand, within GFF912at 90.367 kb on + strand, within GFF912at 90.368 kb on - strand, within GFF912at 90.368 kb on - strand, within GFF912at 90.371 kb on + strand, within GFF912at 90.371 kb on + strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.585 kb on - strand, within GFF912at 90.605 kb on + strand, within GFF912at 90.605 kb on + strand, within GFF912at 90.606 kb on - strand, within GFF912at 90.625 kb on - strand, within GFF912at 90.625 kb on - strand, within GFF912at 90.665 kb on + strand, within GFF912

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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88,123 + GFF909 0.39 +0.0
88,128 + GFF909 0.41 -0.2
88,128 + GFF909 0.41 -0.1
88,136 - GFF909 0.44 +0.1
88,229 + GFF909 0.74 +0.3
88,230 - GFF909 0.75 -0.2
88,343 - -0.2
88,448 + GFF910 0.15 +2.0
88,688 - GFF910 0.46 +0.2
88,928 + GFF910 0.77 -0.1
89,207 - GFF911 0.14 +1.1
89,210 + GFF911 0.14 -0.0
89,211 - GFF911 0.15 +1.5
89,213 + GFF911 0.15 +0.8
89,213 + GFF911 0.15 -0.1
89,213 + GFF911 0.15 -0.0
89,213 + GFF911 0.15 +0.2
89,213 + GFF911 0.15 +0.1
89,213 + GFF911 0.15 +2.0
89,214 - GFF911 0.15 -0.1
89,214 - GFF911 0.15 -0.1
89,219 + GFF911 0.16 +0.4
89,237 - GFF911 0.19 -0.2
89,498 + GFF911 0.59 +0.1
89,518 + GFF911 0.62 +0.1
89,678 + GFF911 0.87 -0.1
89,678 + GFF911 0.87 +0.4
89,679 - GFF911 0.87 +0.0
89,679 - GFF911 0.87 +1.2
89,679 - GFF911 0.87 -0.7
89,759 + +0.2
89,759 + +0.1
89,830 + +0.3
89,830 + -1.3
89,870 + +0.2
89,871 - -0.2
89,873 + -0.8
89,874 - -0.1
90,096 - GFF912 0.24 +0.1
90,142 - GFF912 0.28 -0.7
90,173 + GFF912 0.31 +0.7
90,174 - GFF912 0.31 -1.1
90,254 + GFF912 0.38 +0.6
90,367 + GFF912 0.48 +0.7
90,367 + GFF912 0.48 +0.1
90,368 - GFF912 0.48 +0.7
90,368 - GFF912 0.48 -0.4
90,371 + GFF912 0.49 +0.0
90,371 + GFF912 0.49 -0.3
90,372 - GFF912 0.49 -0.2
90,372 - GFF912 0.49 -2.4
90,372 - GFF912 0.49 -0.1
90,585 - GFF912 0.67 +1.5
90,605 + GFF912 0.69 +0.1
90,605 + GFF912 0.69 -0.0
90,606 - GFF912 0.69 -0.2
90,625 - GFF912 0.71 +0.3
90,625 - GFF912 0.71 +0.1
90,665 + GFF912 0.75 +1.0

Or see this region's nucleotide sequence