Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF891 and GFF892 are separated by 96 nucleotides GFF892 and GFF893 are separated by 0 nucleotides GFF893 and GFF894 overlap by 4 nucleotides
GFF891 - Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18), at 71,258 to 72,268
GFF891
GFF892 - lysosomal glucosyl ceramidase-like protein, at 72,365 to 73,708
GFF892
GFF893 - Inosose isomerase (EC 5.3.99.-), at 73,709 to 74,542
GFF893
GFF894 - FIG01046005: hypothetical protein, at 74,539 to 75,705
GFF894
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1 at 71.396 kb on - strand, within GFF891 at 71.400 kb on - strand, within GFF891 at 71.450 kb on - strand, within GFF891 at 71.525 kb on - strand, within GFF891 at 71.765 kb on - strand, within GFF891 at 71.765 kb on - strand, within GFF891 at 71.768 kb on + strand, within GFF891 at 71.769 kb on - strand, within GFF891 at 72.047 kb on - strand, within GFF891 at 72.082 kb on + strand, within GFF891 at 72.083 kb on - strand, within GFF891 at 72.170 kb on + strand at 72.462 kb on + strand at 72.463 kb on - strand at 72.663 kb on - strand, within GFF892 at 72.663 kb on - strand, within GFF892 at 72.811 kb on + strand, within GFF892 at 72.820 kb on + strand, within GFF892 at 72.893 kb on + strand, within GFF892 at 72.894 kb on - strand, within GFF892 at 72.986 kb on + strand, within GFF892 at 72.986 kb on + strand, within GFF892 at 72.987 kb on - strand, within GFF892 at 72.988 kb on + strand, within GFF892 at 72.989 kb on - strand, within GFF892 at 73.070 kb on + strand, within GFF892 at 73.172 kb on + strand, within GFF892 at 73.197 kb on + strand, within GFF892 at 73.297 kb on + strand, within GFF892 at 73.466 kb on + strand, within GFF892 at 73.467 kb on - strand, within GFF892 at 73.467 kb on - strand, within GFF892 at 73.491 kb on - strand, within GFF892 at 73.592 kb on + strand at 73.592 kb on + strand at 73.592 kb on + strand at 73.592 kb on + strand at 73.640 kb on - strand at 73.678 kb on + strand at 73.679 kb on - strand at 73.687 kb on - strand at 73.799 kb on + strand, within GFF893 at 73.819 kb on + strand, within GFF893 at 73.820 kb on - strand, within GFF893 at 73.820 kb on - strand, within GFF893 at 73.846 kb on + strand, within GFF893 at 73.852 kb on - strand, within GFF893 at 73.888 kb on + strand, within GFF893 at 73.889 kb on - strand, within GFF893 at 73.902 kb on - strand, within GFF893 at 74.194 kb on - strand, within GFF893 at 74.418 kb on + strand, within GFF893 at 74.433 kb on - strand, within GFF893 at 74.532 kb on + strand at 74.541 kb on - strand at 74.541 kb on - strand at 74.618 kb on + strand at 74.647 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 71,396 - GFF891 0.14 -0.6 71,400 - GFF891 0.14 -0.2 71,450 - GFF891 0.19 +0.3 71,525 - GFF891 0.26 -0.1 71,765 - GFF891 0.50 +0.2 71,765 - GFF891 0.50 -0.5 71,768 + GFF891 0.50 +0.1 71,769 - GFF891 0.51 -0.3 72,047 - GFF891 0.78 -0.5 72,082 + GFF891 0.82 +0.3 72,083 - GFF891 0.82 +0.3 72,170 + -0.5 72,462 + +1.3 72,463 - -0.4 72,663 - GFF892 0.22 +0.1 72,663 - GFF892 0.22 -2.7 72,811 + GFF892 0.33 +0.3 72,820 + GFF892 0.34 +0.1 72,893 + GFF892 0.39 -0.1 72,894 - GFF892 0.39 -0.2 72,986 + GFF892 0.46 -0.3 72,986 + GFF892 0.46 -0.0 72,987 - GFF892 0.46 -0.5 72,988 + GFF892 0.46 -0.6 72,989 - GFF892 0.46 +0.2 73,070 + GFF892 0.52 -0.3 73,172 + GFF892 0.60 +0.3 73,197 + GFF892 0.62 -0.3 73,297 + GFF892 0.69 -0.5 73,466 + GFF892 0.82 +0.3 73,467 - GFF892 0.82 -0.6 73,467 - GFF892 0.82 -0.7 73,491 - GFF892 0.84 -0.2 73,592 + +0.3 73,592 + -1.0 73,592 + -0.3 73,592 + -0.3 73,640 - -0.9 73,678 + -2.4 73,679 - +0.1 73,687 - +0.1 73,799 + GFF893 0.11 +0.1 73,819 + GFF893 0.13 +0.2 73,820 - GFF893 0.13 -0.5 73,820 - GFF893 0.13 -0.2 73,846 + GFF893 0.16 -0.1 73,852 - GFF893 0.17 +0.2 73,888 + GFF893 0.21 +0.5 73,889 - GFF893 0.22 -0.3 73,902 - GFF893 0.23 +0.1 74,194 - GFF893 0.58 -0.1 74,418 + GFF893 0.85 -0.2 74,433 - GFF893 0.87 +0.1 74,532 + -0.1 74,541 - +0.5 74,541 - +0.0 74,618 + -0.7 74,647 + +0.6
Or see this region's nucleotide sequence