Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF869 and GFF870 are separated by 326 nucleotides GFF870 and GFF871 are separated by 84 nucleotides GFF871 and GFF872 are separated by 182 nucleotides GFF872 and GFF873 are separated by 54 nucleotides
GFF869 - Protein ytfJ precursor, at 45,850 to 46,407
GFF869
GFF870 - FIG00614015: hypothetical protein, at 46,734 to 46,940
GFF870
GFF871 - Putative membrane protein, at 47,025 to 48,368
GFF871
GFF872 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 48,551 to 49,189
GFF872
GFF873 - hypothetical protein, at 49,244 to 49,360
GFF873
Position (kb) 47
48
49 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 46.038 kb on - strand, within GFF869 at 46.050 kb on + strand, within GFF869 at 46.058 kb on - strand, within GFF869 at 46.058 kb on - strand, within GFF869 at 46.058 kb on - strand, within GFF869 at 46.078 kb on - strand, within GFF869 at 46.128 kb on - strand, within GFF869 at 46.156 kb on - strand, within GFF869 at 46.360 kb on + strand at 46.396 kb on - strand at 46.459 kb on - strand at 46.468 kb on + strand at 46.469 kb on - strand at 46.549 kb on - strand at 46.550 kb on + strand at 46.551 kb on - strand at 46.595 kb on - strand at 46.610 kb on - strand at 46.611 kb on + strand at 46.611 kb on + strand at 46.611 kb on + strand at 46.636 kb on - strand at 46.639 kb on + strand at 46.640 kb on - strand at 46.646 kb on + strand at 46.646 kb on + strand at 46.647 kb on - strand at 46.648 kb on + strand at 46.716 kb on - strand at 46.716 kb on - strand at 46.716 kb on - strand at 46.716 kb on - strand at 46.752 kb on + strand at 46.752 kb on + strand at 46.805 kb on - strand, within GFF870 at 46.806 kb on + strand, within GFF870 at 46.806 kb on + strand, within GFF870 at 46.806 kb on + strand, within GFF870 at 46.806 kb on + strand, within GFF870 at 46.807 kb on - strand, within GFF870 at 46.807 kb on - strand, within GFF870 at 46.807 kb on - strand, within GFF870 at 46.964 kb on - strand at 47.045 kb on + strand at 47.076 kb on + strand at 47.204 kb on + strand, within GFF871 at 47.233 kb on + strand, within GFF871 at 47.422 kb on + strand, within GFF871 at 47.593 kb on + strand, within GFF871 at 47.622 kb on - strand, within GFF871 at 47.706 kb on - strand, within GFF871 at 47.724 kb on - strand, within GFF871 at 47.769 kb on + strand, within GFF871 at 47.827 kb on + strand, within GFF871 at 47.831 kb on + strand, within GFF871 at 47.832 kb on - strand, within GFF871 at 47.832 kb on - strand, within GFF871 at 47.843 kb on + strand, within GFF871 at 47.843 kb on + strand, within GFF871 at 48.063 kb on - strand, within GFF871 at 48.095 kb on + strand, within GFF871 at 48.095 kb on + strand, within GFF871 at 48.095 kb on + strand, within GFF871 at 48.096 kb on - strand, within GFF871 at 48.097 kb on + strand, within GFF871 at 48.097 kb on + strand, within GFF871 at 48.246 kb on - strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.269 kb on + strand at 48.270 kb on - strand at 48.281 kb on + strand at 48.345 kb on + strand at 48.346 kb on - strand at 48.355 kb on - strand at 48.409 kb on + strand at 48.410 kb on - strand at 48.412 kb on - strand at 48.474 kb on + strand at 48.484 kb on + strand at 48.485 kb on - strand at 48.485 kb on - strand at 48.485 kb on - strand at 48.490 kb on - strand at 48.494 kb on + strand at 48.538 kb on + strand at 48.649 kb on - strand, within GFF872 at 48.806 kb on - strand, within GFF872 at 48.888 kb on + strand, within GFF872 at 48.888 kb on + strand, within GFF872 at 48.889 kb on - strand, within GFF872 at 48.988 kb on + strand, within GFF872 at 48.988 kb on + strand, within GFF872 at 48.989 kb on - strand, within GFF872 at 48.989 kb on - strand, within GFF872 at 48.992 kb on + strand, within GFF872 at 48.992 kb on + strand, within GFF872 at 49.051 kb on - strand, within GFF872 at 49.085 kb on - strand, within GFF872 at 49.212 kb on - strand at 49.285 kb on - strand, within GFF873
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 46,038 - GFF869 0.34 +0.9 46,050 + GFF869 0.36 +0.3 46,058 - GFF869 0.37 +0.3 46,058 - GFF869 0.37 -0.1 46,058 - GFF869 0.37 +0.1 46,078 - GFF869 0.41 +0.2 46,128 - GFF869 0.50 +0.5 46,156 - GFF869 0.55 -0.1 46,360 + -0.5 46,396 - -0.0 46,459 - -0.1 46,468 + -0.0 46,469 - -0.2 46,549 - -0.1 46,550 + -0.2 46,551 - -0.5 46,595 - -0.2 46,610 - -0.3 46,611 + -0.1 46,611 + +0.2 46,611 + +0.1 46,636 - +0.4 46,639 + +0.3 46,640 - +0.9 46,646 + +0.3 46,646 + -0.0 46,647 - +0.7 46,648 + +0.6 46,716 - +0.5 46,716 - -0.6 46,716 - +1.3 46,716 - +0.7 46,752 + -0.4 46,752 + +1.2 46,805 - GFF870 0.34 +0.3 46,806 + GFF870 0.35 -0.2 46,806 + GFF870 0.35 -0.0 46,806 + GFF870 0.35 +0.2 46,806 + GFF870 0.35 +0.2 46,807 - GFF870 0.35 -0.0 46,807 - GFF870 0.35 -0.4 46,807 - GFF870 0.35 -1.6 46,964 - -0.5 47,045 + -1.6 47,076 + -2.5 47,204 + GFF871 0.13 -3.4 47,233 + GFF871 0.15 -4.4 47,422 + GFF871 0.30 -4.0 47,593 + GFF871 0.42 -1.7 47,622 - GFF871 0.44 -4.1 47,706 - GFF871 0.51 -4.1 47,724 - GFF871 0.52 -2.0 47,769 + GFF871 0.55 -1.9 47,827 + GFF871 0.60 -3.9 47,831 + GFF871 0.60 -3.7 47,832 - GFF871 0.60 -4.0 47,832 - GFF871 0.60 -4.5 47,843 + GFF871 0.61 -5.1 47,843 + GFF871 0.61 -4.7 48,063 - GFF871 0.77 -2.6 48,095 + GFF871 0.80 -5.3 48,095 + GFF871 0.80 -3.1 48,095 + GFF871 0.80 -7.4 48,096 - GFF871 0.80 -1.7 48,097 + GFF871 0.80 -3.3 48,097 + GFF871 0.80 -5.6 48,246 - -3.6 48,264 + -4.7 48,264 + -4.3 48,265 - -3.1 48,265 - -4.1 48,269 + -4.7 48,270 - -3.1 48,281 + -7.4 48,345 + -2.3 48,346 - -3.4 48,355 - -5.0 48,409 + -6.7 48,410 - +0.1 48,412 - +0.3 48,474 + -2.9 48,484 + -1.1 48,485 - +0.5 48,485 - -0.8 48,485 - -0.5 48,490 - -0.2 48,494 + -0.1 48,538 + +0.8 48,649 - GFF872 0.15 +0.1 48,806 - GFF872 0.40 -0.8 48,888 + GFF872 0.53 +0.3 48,888 + GFF872 0.53 +0.0 48,889 - GFF872 0.53 -0.1 48,988 + GFF872 0.68 -0.6 48,988 + GFF872 0.68 +0.4 48,989 - GFF872 0.69 +0.1 48,989 - GFF872 0.69 +0.4 48,992 + GFF872 0.69 +0.2 48,992 + GFF872 0.69 +0.4 49,051 - GFF872 0.78 +0.5 49,085 - GFF872 0.84 +0.5 49,212 - -0.7 49,285 - GFF873 0.35 +0.3
Or see this region's nucleotide sequence