Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF836 and GFF837 overlap by 4 nucleotides GFF837 and GFF838 are separated by 17 nucleotides GFF838 and GFF839 are separated by 9 nucleotides
GFF836 - Putative potassium channel protein, at 18,922 to 19,992
GFF836
GFF837 - FIG00638518: hypothetical protein, at 19,989 to 20,648
GFF837
GFF838 - Membrane protein with DUF350 domain, at 20,666 to 21,064
GFF838
GFF839 - FIG00637977: hypothetical protein, at 21,074 to 21,712
GFF839
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1
2 at 19.021 kb on + strand at 19.068 kb on - strand, within GFF836 at 19.082 kb on - strand, within GFF836 at 19.084 kb on + strand, within GFF836 at 19.250 kb on + strand, within GFF836 at 19.268 kb on - strand, within GFF836 at 19.278 kb on - strand, within GFF836 at 19.287 kb on + strand, within GFF836 at 19.288 kb on - strand, within GFF836 at 19.288 kb on - strand, within GFF836 at 19.288 kb on - strand, within GFF836 at 19.288 kb on - strand, within GFF836 at 19.288 kb on - strand, within GFF836 at 19.343 kb on + strand, within GFF836 at 19.343 kb on + strand, within GFF836 at 19.344 kb on - strand, within GFF836 at 19.396 kb on - strand, within GFF836 at 19.396 kb on - strand, within GFF836 at 19.419 kb on + strand, within GFF836 at 19.566 kb on - strand, within GFF836 at 19.591 kb on + strand, within GFF836 at 19.610 kb on - strand, within GFF836 at 19.649 kb on + strand, within GFF836 at 19.725 kb on + strand, within GFF836 at 19.922 kb on + strand at 19.939 kb on - strand at 19.939 kb on - strand at 19.976 kb on + strand at 19.989 kb on - strand at 20.054 kb on - strand at 20.066 kb on + strand, within GFF837 at 20.171 kb on - strand, within GFF837 at 20.206 kb on - strand, within GFF837 at 20.206 kb on - strand, within GFF837 at 20.206 kb on - strand, within GFF837 at 20.235 kb on - strand, within GFF837 at 20.288 kb on - strand, within GFF837 at 20.290 kb on - strand, within GFF837 at 20.424 kb on - strand, within GFF837 at 20.673 kb on + strand at 20.673 kb on + strand at 20.674 kb on - strand at 20.933 kb on + strand, within GFF838 at 20.944 kb on - strand, within GFF838 at 20.949 kb on + strand, within GFF838 at 20.951 kb on + strand, within GFF838 at 20.951 kb on + strand, within GFF838 at 20.952 kb on - strand, within GFF838 at 20.952 kb on - strand, within GFF838 at 20.952 kb on - strand, within GFF838 at 21.007 kb on + strand, within GFF838 at 21.368 kb on + strand, within GFF839 at 21.437 kb on - strand, within GFF839 at 21.465 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.516 kb on - strand, within GFF839 at 21.516 kb on - strand, within GFF839 at 21.521 kb on + strand, within GFF839 at 21.521 kb on + strand, within GFF839 at 21.521 kb on + strand, within GFF839 at 21.522 kb on - strand, within GFF839 at 21.524 kb on - strand, within GFF839 at 21.542 kb on + strand, within GFF839 at 21.542 kb on + strand, within GFF839 at 21.542 kb on + strand, within GFF839 at 21.543 kb on - strand, within GFF839 at 21.543 kb on - strand, within GFF839 at 21.582 kb on - strand, within GFF839
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 19,021 + -0.4 19,068 - GFF836 0.14 -0.1 19,082 - GFF836 0.15 +0.1 19,084 + GFF836 0.15 +0.0 19,250 + GFF836 0.31 -0.1 19,268 - GFF836 0.32 -0.3 19,278 - GFF836 0.33 +0.0 19,287 + GFF836 0.34 +0.3 19,288 - GFF836 0.34 +0.2 19,288 - GFF836 0.34 +0.1 19,288 - GFF836 0.34 -0.3 19,288 - GFF836 0.34 -0.6 19,288 - GFF836 0.34 +0.2 19,343 + GFF836 0.39 -0.4 19,343 + GFF836 0.39 +0.4 19,344 - GFF836 0.39 +0.0 19,396 - GFF836 0.44 +0.1 19,396 - GFF836 0.44 +0.1 19,419 + GFF836 0.46 -0.3 19,566 - GFF836 0.60 +0.2 19,591 + GFF836 0.62 -0.9 19,610 - GFF836 0.64 -0.3 19,649 + GFF836 0.68 +0.1 19,725 + GFF836 0.75 -0.5 19,922 + -0.1 19,939 - +1.1 19,939 - +0.3 19,976 + -0.2 19,989 - +0.8 20,054 - +0.1 20,066 + GFF837 0.12 -0.4 20,171 - GFF837 0.28 -0.1 20,206 - GFF837 0.33 +0.1 20,206 - GFF837 0.33 -0.3 20,206 - GFF837 0.33 -0.8 20,235 - GFF837 0.37 -0.7 20,288 - GFF837 0.45 -0.1 20,290 - GFF837 0.46 -0.2 20,424 - GFF837 0.66 +0.5 20,673 + -0.6 20,673 + +0.1 20,674 - +0.2 20,933 + GFF838 0.67 +1.8 20,944 - GFF838 0.70 +0.5 20,949 + GFF838 0.71 +0.0 20,951 + GFF838 0.71 -0.3 20,951 + GFF838 0.71 -0.4 20,952 - GFF838 0.72 +0.4 20,952 - GFF838 0.72 -0.2 20,952 - GFF838 0.72 +0.9 21,007 + GFF838 0.85 +0.2 21,368 + GFF839 0.46 -0.1 21,437 - GFF839 0.57 -0.4 21,465 + GFF839 0.61 +0.3 21,515 + GFF839 0.69 +0.0 21,515 + GFF839 0.69 +0.1 21,515 + GFF839 0.69 -1.5 21,515 + GFF839 0.69 -0.2 21,516 - GFF839 0.69 +0.4 21,516 - GFF839 0.69 +0.4 21,521 + GFF839 0.70 +0.2 21,521 + GFF839 0.70 +0.4 21,521 + GFF839 0.70 -0.3 21,522 - GFF839 0.70 +0.0 21,524 - GFF839 0.70 -0.1 21,542 + GFF839 0.73 +0.1 21,542 + GFF839 0.73 +0.0 21,542 + GFF839 0.73 +0.6 21,543 - GFF839 0.73 +0.3 21,543 - GFF839 0.73 -0.0 21,582 - GFF839 0.79 +0.3
Or see this region's nucleotide sequence