Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF815 and GFF816 are separated by 59 nucleotides GFF816 and GFF817 are separated by 53 nucleotides GFF817 and GFF818 are separated by 144 nucleotides
GFF815 - Phage tail assembly protein, at 160,798 to 161,397
GFF815
GFF816 - Phage tail assembly protein I, at 161,457 to 161,972
GFF816
GFF817 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 162,026 to 162,550
GFF817
GFF818 - Phage tail fiber protein, at 162,695 to 166,090
GFF818
Position (kb) 162
163 Strain fitness (log2 ratio) -1
0
1 at 161.038 kb on + strand, within GFF815 at 161.111 kb on - strand, within GFF815 at 161.225 kb on - strand, within GFF815 at 161.284 kb on + strand, within GFF815 at 161.284 kb on + strand, within GFF815 at 161.396 kb on - strand at 161.415 kb on - strand at 161.479 kb on + strand at 161.878 kb on - strand, within GFF816 at 162.194 kb on + strand, within GFF817 at 162.236 kb on - strand, within GFF817 at 162.253 kb on + strand, within GFF817 at 162.364 kb on + strand, within GFF817 at 162.694 kb on + strand at 162.718 kb on + strand at 163.099 kb on - strand, within GFF818 at 163.099 kb on - strand, within GFF818 at 163.099 kb on - strand, within GFF818 at 163.153 kb on + strand, within GFF818 at 163.154 kb on - strand, within GFF818 at 163.258 kb on + strand, within GFF818 at 163.400 kb on + strand, within GFF818 at 163.401 kb on - strand, within GFF818 at 163.460 kb on + strand, within GFF818 at 163.461 kb on - strand, within GFF818 at 163.462 kb on + strand, within GFF818 at 163.463 kb on - strand, within GFF818 at 163.463 kb on - strand, within GFF818
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 161,038 + GFF815 0.40 -0.2 161,111 - GFF815 0.52 -0.4 161,225 - GFF815 0.71 -1.1 161,284 + GFF815 0.81 -0.6 161,284 + GFF815 0.81 -0.2 161,396 - -0.9 161,415 - -0.6 161,479 + -0.3 161,878 - GFF816 0.82 -1.2 162,194 + GFF817 0.32 -0.5 162,236 - GFF817 0.40 -0.8 162,253 + GFF817 0.43 -0.7 162,364 + GFF817 0.64 -1.0 162,694 + -0.9 162,718 + +0.0 163,099 - GFF818 0.12 -1.0 163,099 - GFF818 0.12 -0.9 163,099 - GFF818 0.12 -1.4 163,153 + GFF818 0.13 -1.0 163,154 - GFF818 0.14 -1.2 163,258 + GFF818 0.17 +0.4 163,400 + GFF818 0.21 -1.4 163,401 - GFF818 0.21 -0.6 163,460 + GFF818 0.23 -0.2 163,461 - GFF818 0.23 -0.2 163,462 + GFF818 0.23 -0.2 163,463 - GFF818 0.23 -0.4 163,463 - GFF818 0.23 -0.1
Or see this region's nucleotide sequence