Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF81

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF79 and GFF80 overlap by 1 nucleotidesGFF80 and GFF81 are separated by 48 nucleotidesGFF81 and GFF82 are separated by 91 nucleotidesGFF82 and GFF83 are separated by 138 nucleotides GFF79 - Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD, at 61,426 to 62,316 GFF79 GFF80 - Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC, at 62,316 to 63,113 GFF80 GFF81 - Ferric hydroxamate outer membrane receptor FhuA, at 63,162 to 65,273 GFF81 GFF82 - hypothetical protein, at 65,365 to 65,505 GFF82 GFF83 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 65,644 to 68,166 GFF83 Position (kb) 63 64 65 66Strain fitness (log2 ratio) -1 0 1 2at 62.281 kb on + strandat 62.295 kb on + strandat 62.304 kb on - strandat 62.317 kb on + strandat 62.318 kb on - strandat 62.318 kb on - strandat 62.320 kb on + strandat 62.320 kb on + strandat 62.381 kb on - strandat 62.464 kb on + strand, within GFF80at 62.704 kb on - strand, within GFF80at 62.730 kb on + strand, within GFF80at 62.848 kb on + strand, within GFF80at 62.966 kb on + strand, within GFF80at 62.987 kb on + strand, within GFF80at 62.988 kb on - strand, within GFF80at 63.087 kb on - strandat 63.220 kb on + strandat 63.263 kb on + strandat 63.316 kb on + strandat 63.316 kb on + strandat 63.351 kb on + strandat 63.448 kb on + strand, within GFF81at 63.536 kb on + strand, within GFF81at 63.537 kb on - strand, within GFF81at 63.537 kb on - strand, within GFF81at 63.537 kb on - strand, within GFF81at 63.538 kb on + strand, within GFF81at 63.538 kb on + strand, within GFF81at 63.539 kb on - strand, within GFF81at 63.539 kb on - strand, within GFF81at 63.539 kb on - strand, within GFF81at 63.557 kb on + strand, within GFF81at 63.558 kb on - strand, within GFF81at 63.598 kb on - strand, within GFF81at 63.746 kb on - strand, within GFF81at 63.826 kb on + strand, within GFF81at 63.826 kb on + strand, within GFF81at 63.827 kb on - strand, within GFF81at 63.835 kb on + strand, within GFF81at 63.863 kb on - strand, within GFF81at 63.900 kb on - strand, within GFF81at 63.908 kb on + strand, within GFF81at 63.909 kb on - strand, within GFF81at 64.085 kb on - strand, within GFF81at 64.097 kb on - strand, within GFF81at 64.187 kb on + strand, within GFF81at 64.230 kb on - strand, within GFF81at 64.403 kb on - strand, within GFF81at 64.429 kb on + strand, within GFF81at 64.552 kb on + strand, within GFF81at 64.566 kb on - strand, within GFF81at 64.782 kb on - strand, within GFF81at 64.997 kb on + strand, within GFF81at 65.026 kb on - strand, within GFF81at 65.132 kb on + strandat 65.133 kb on - strandat 65.296 kb on - strandat 65.355 kb on + strandat 65.356 kb on - strandat 65.357 kb on + strandat 65.396 kb on - strand, within GFF82at 65.528 kb on + strandat 65.572 kb on + strandat 65.809 kb on - strandat 65.874 kb on - strandat 65.917 kb on + strand, within GFF83at 65.982 kb on - strand, within GFF83at 66.179 kb on + strand, within GFF83at 66.228 kb on - strand, within GFF83at 66.238 kb on - strand, within GFF83

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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62,281 + -0.5
62,295 + -0.0
62,304 - -0.0
62,317 + +0.3
62,318 - +0.2
62,318 - +0.2
62,320 + -0.7
62,320 + -0.2
62,381 - +0.2
62,464 + GFF80 0.19 +0.2
62,704 - GFF80 0.49 +0.3
62,730 + GFF80 0.52 -0.4
62,848 + GFF80 0.67 +0.3
62,966 + GFF80 0.81 +0.5
62,987 + GFF80 0.84 +1.8
62,988 - GFF80 0.84 -0.5
63,087 - -0.4
63,220 + -0.0
63,263 + +0.3
63,316 + -1.0
63,316 + +0.2
63,351 + +0.1
63,448 + GFF81 0.14 +1.2
63,536 + GFF81 0.18 +0.2
63,537 - GFF81 0.18 +0.1
63,537 - GFF81 0.18 +0.4
63,537 - GFF81 0.18 +1.2
63,538 + GFF81 0.18 +0.2
63,538 + GFF81 0.18 +0.6
63,539 - GFF81 0.18 +2.3
63,539 - GFF81 0.18 -0.4
63,539 - GFF81 0.18 -0.2
63,557 + GFF81 0.19 +0.7
63,558 - GFF81 0.19 -1.5
63,598 - GFF81 0.21 +0.0
63,746 - GFF81 0.28 +0.2
63,826 + GFF81 0.31 +0.0
63,826 + GFF81 0.31 +0.0
63,827 - GFF81 0.31 +0.9
63,835 + GFF81 0.32 -0.0
63,863 - GFF81 0.33 +0.4
63,900 - GFF81 0.35 -0.0
63,908 + GFF81 0.35 -0.1
63,909 - GFF81 0.35 -0.1
64,085 - GFF81 0.44 +1.5
64,097 - GFF81 0.44 +0.2
64,187 + GFF81 0.49 +1.4
64,230 - GFF81 0.51 -0.4
64,403 - GFF81 0.59 +0.2
64,429 + GFF81 0.60 -0.6
64,552 + GFF81 0.66 +0.7
64,566 - GFF81 0.66 +0.5
64,782 - GFF81 0.77 +0.1
64,997 + GFF81 0.87 -0.1
65,026 - GFF81 0.88 +0.0
65,132 + +0.2
65,133 - +0.1
65,296 - +0.5
65,355 + +0.1
65,356 - -0.1
65,357 + -0.2
65,396 - GFF82 0.22 -0.0
65,528 + +0.2
65,572 + +0.4
65,809 - +0.8
65,874 - -0.1
65,917 + GFF83 0.11 -0.2
65,982 - GFF83 0.13 -0.3
66,179 + GFF83 0.21 +0.0
66,228 - GFF83 0.23 -0.4
66,238 - GFF83 0.24 -0.1

Or see this region's nucleotide sequence