Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF803

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF802 and GFF803 overlap by 38 nucleotidesGFF803 and GFF804 are separated by 88 nucleotidesGFF804 and GFF805 overlap by 8 nucleotidesGFF805 and GFF806 are separated by 3 nucleotides GFF802 - Phage portal protein, at 148,940 to 150,475 GFF802 GFF803 - Prophage Clp protease-like protein, at 150,438 to 152,513 GFF803 GFF804 - putative RecA/RadA recombinase, at 152,602 to 152,925 GFF804 GFF805 - Phage protein, at 152,918 to 153,193 GFF805 GFF806 - Phage tail completion protein, at 153,197 to 153,781 GFF806 Position (kb) 150 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1at 149.543 kb on + strand, within GFF802at 149.708 kb on + strand, within GFF802at 149.793 kb on - strand, within GFF802at 149.812 kb on + strand, within GFF802at 149.813 kb on - strand, within GFF802at 150.038 kb on + strand, within GFF802at 150.062 kb on - strand, within GFF802at 150.148 kb on + strand, within GFF802at 150.149 kb on - strand, within GFF802at 150.238 kb on - strand, within GFF802at 150.238 kb on - strand, within GFF802at 150.524 kb on + strandat 150.525 kb on - strandat 150.528 kb on + strandat 150.617 kb on + strandat 150.617 kb on + strandat 150.660 kb on + strand, within GFF803at 150.699 kb on + strand, within GFF803at 150.700 kb on - strand, within GFF803at 150.700 kb on - strand, within GFF803at 151.077 kb on - strand, within GFF803at 151.184 kb on + strand, within GFF803at 151.184 kb on + strand, within GFF803at 151.447 kb on - strand, within GFF803at 151.537 kb on - strand, within GFF803at 151.831 kb on - strand, within GFF803at 151.832 kb on + strand, within GFF803at 151.998 kb on + strand, within GFF803at 152.265 kb on - strand, within GFF803at 152.452 kb on + strandat 152.529 kb on - strandat 152.618 kb on + strandat 152.618 kb on + strandat 152.619 kb on - strandat 152.619 kb on - strandat 153.032 kb on - strand, within GFF805at 153.092 kb on + strand, within GFF805at 153.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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149,543 + GFF802 0.39 -0.4
149,708 + GFF802 0.50 -1.0
149,793 - GFF802 0.56 -0.8
149,812 + GFF802 0.57 -0.6
149,813 - GFF802 0.57 -0.7
150,038 + GFF802 0.71 -0.6
150,062 - GFF802 0.73 -0.5
150,148 + GFF802 0.79 -1.0
150,149 - GFF802 0.79 -0.7
150,238 - GFF802 0.85 -0.7
150,238 - GFF802 0.85 -0.4
150,524 + -0.8
150,525 - -0.9
150,528 + -0.5
150,617 + -1.0
150,617 + -0.6
150,660 + GFF803 0.11 -0.7
150,699 + GFF803 0.13 -0.1
150,700 - GFF803 0.13 -0.4
150,700 - GFF803 0.13 -1.3
151,077 - GFF803 0.31 -2.9
151,184 + GFF803 0.36 -1.0
151,184 + GFF803 0.36 -1.0
151,447 - GFF803 0.49 +0.2
151,537 - GFF803 0.53 -1.0
151,831 - GFF803 0.67 -0.8
151,832 + GFF803 0.67 -1.0
151,998 + GFF803 0.75 +0.6
152,265 - GFF803 0.88 -1.1
152,452 + +0.1
152,529 - -1.0
152,618 + -0.6
152,618 + -0.7
152,619 - -1.1
152,619 - +0.7
153,032 - GFF805 0.41 -0.9
153,092 + GFF805 0.63 +0.0
153,253 + +0.6

Or see this region's nucleotide sequence