Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF803
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
149,543 | + | GFF802 | 0.39 | -0.4 | |
149,708 | + | GFF802 | 0.50 | -1.0 | |
149,793 | - | GFF802 | 0.56 | -0.8 | |
149,812 | + | GFF802 | 0.57 | -0.6 | |
149,813 | - | GFF802 | 0.57 | -0.7 | |
150,038 | + | GFF802 | 0.71 | -0.6 | |
150,062 | - | GFF802 | 0.73 | -0.5 | |
150,148 | + | GFF802 | 0.79 | -1.0 | |
150,149 | - | GFF802 | 0.79 | -0.7 | |
150,238 | - | GFF802 | 0.85 | -0.7 | |
150,238 | - | GFF802 | 0.85 | -0.4 | |
150,524 | + | -0.8 | |||
150,525 | - | -0.9 | |||
150,528 | + | -0.5 | |||
150,617 | + | -1.0 | |||
150,617 | + | -0.6 | |||
150,660 | + | GFF803 | 0.11 | -0.7 | |
150,699 | + | GFF803 | 0.13 | -0.1 | |
150,700 | - | GFF803 | 0.13 | -0.4 | |
150,700 | - | GFF803 | 0.13 | -1.3 | |
151,077 | - | GFF803 | 0.31 | -2.9 | |
151,184 | + | GFF803 | 0.36 | -1.0 | |
151,184 | + | GFF803 | 0.36 | -1.0 | |
151,447 | - | GFF803 | 0.49 | +0.2 | |
151,537 | - | GFF803 | 0.53 | -1.0 | |
151,831 | - | GFF803 | 0.67 | -0.8 | |
151,832 | + | GFF803 | 0.67 | -1.0 | |
151,998 | + | GFF803 | 0.75 | +0.6 | |
152,265 | - | GFF803 | 0.88 | -1.1 | |
152,452 | + | +0.1 | |||
152,529 | - | -1.0 | |||
152,618 | + | -0.6 | |||
152,618 | + | -0.7 | |||
152,619 | - | -1.1 | |||
152,619 | - | +0.7 | |||
153,032 | - | GFF805 | 0.41 | -0.9 | |
153,092 | + | GFF805 | 0.63 | +0.0 | |
153,253 | + | +0.6 |
Or see this region's nucleotide sequence