Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF802 and GFF803 overlap by 38 nucleotides GFF803 and GFF804 are separated by 88 nucleotides GFF804 and GFF805 overlap by 8 nucleotides GFF805 and GFF806 are separated by 3 nucleotides
GFF802 - Phage portal protein, at 148,940 to 150,475
GFF802
GFF803 - Prophage Clp protease-like protein, at 150,438 to 152,513
GFF803
GFF804 - putative RecA/RadA recombinase, at 152,602 to 152,925
GFF804
GFF805 - Phage protein, at 152,918 to 153,193
GFF805
GFF806 - Phage tail completion protein, at 153,197 to 153,781
GFF806
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 149.543 kb on + strand, within GFF802 at 149.708 kb on + strand, within GFF802 at 149.793 kb on - strand, within GFF802 at 149.812 kb on + strand, within GFF802 at 149.813 kb on - strand, within GFF802 at 150.038 kb on + strand, within GFF802 at 150.062 kb on - strand, within GFF802 at 150.148 kb on + strand, within GFF802 at 150.149 kb on - strand, within GFF802 at 150.238 kb on - strand, within GFF802 at 150.238 kb on - strand, within GFF802 at 150.524 kb on + strand at 150.525 kb on - strand at 150.528 kb on + strand at 150.617 kb on + strand at 150.617 kb on + strand at 150.660 kb on + strand, within GFF803 at 150.699 kb on + strand, within GFF803 at 150.700 kb on - strand, within GFF803 at 150.700 kb on - strand, within GFF803 at 151.077 kb on - strand, within GFF803 at 151.184 kb on + strand, within GFF803 at 151.184 kb on + strand, within GFF803 at 151.447 kb on - strand, within GFF803 at 151.537 kb on - strand, within GFF803 at 151.831 kb on - strand, within GFF803 at 151.832 kb on + strand, within GFF803 at 151.998 kb on + strand, within GFF803 at 152.265 kb on - strand, within GFF803 at 152.452 kb on + strand at 152.529 kb on - strand at 152.618 kb on + strand at 152.618 kb on + strand at 152.619 kb on - strand at 152.619 kb on - strand at 153.032 kb on - strand, within GFF805 at 153.092 kb on + strand, within GFF805 at 153.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 149,543 + GFF802 0.39 -0.4 149,708 + GFF802 0.50 -1.0 149,793 - GFF802 0.56 -0.8 149,812 + GFF802 0.57 -0.6 149,813 - GFF802 0.57 -0.7 150,038 + GFF802 0.71 -0.6 150,062 - GFF802 0.73 -0.5 150,148 + GFF802 0.79 -1.0 150,149 - GFF802 0.79 -0.7 150,238 - GFF802 0.85 -0.7 150,238 - GFF802 0.85 -0.4 150,524 + -0.8 150,525 - -0.9 150,528 + -0.5 150,617 + -1.0 150,617 + -0.6 150,660 + GFF803 0.11 -0.7 150,699 + GFF803 0.13 -0.1 150,700 - GFF803 0.13 -0.4 150,700 - GFF803 0.13 -1.3 151,077 - GFF803 0.31 -2.9 151,184 + GFF803 0.36 -1.0 151,184 + GFF803 0.36 -1.0 151,447 - GFF803 0.49 +0.2 151,537 - GFF803 0.53 -1.0 151,831 - GFF803 0.67 -0.8 151,832 + GFF803 0.67 -1.0 151,998 + GFF803 0.75 +0.6 152,265 - GFF803 0.88 -1.1 152,452 + +0.1 152,529 - -1.0 152,618 + -0.6 152,618 + -0.7 152,619 - -1.1 152,619 - +0.7 153,032 - GFF805 0.41 -0.9 153,092 + GFF805 0.63 +0.0 153,253 + +0.6
Or see this region's nucleotide sequence