Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF770 and GFF771 are separated by 6 nucleotides GFF771 and GFF772 are separated by 17 nucleotides GFF772 and GFF773 are separated by 229 nucleotides GFF773 and GFF774 are separated by 95 nucleotides
GFF770 - Arginine ABC transporter, permease protein ArtQ, at 126,635 to 127,351
GFF770
GFF771 - Arginine ABC transporter, periplasmic arginine-binding protein ArtI, at 127,358 to 128,089
GFF771
GFF772 - Arginine ABC transporter, ATP-binding protein ArtP, at 128,107 to 128,835
GFF772
GFF773 - probable lipoprotein, at 129,065 to 129,580
GFF773
GFF774 - putative integrase, at 129,676 to 130,974
GFF774
Position (kb)
128
129 Strain fitness (log2 ratio)
-1
0
1 at 127.215 kb on - strand, within GFF770 at 127.269 kb on - strand, within GFF770 at 127.360 kb on - strand at 127.379 kb on - strand at 127.464 kb on - strand, within GFF771 at 127.511 kb on - strand, within GFF771 at 127.511 kb on - strand, within GFF771 at 127.531 kb on + strand, within GFF771 at 127.698 kb on - strand, within GFF771 at 127.737 kb on + strand, within GFF771 at 127.925 kb on - strand, within GFF771 at 127.972 kb on + strand, within GFF771 at 127.973 kb on - strand, within GFF771 at 127.973 kb on - strand, within GFF771 at 128.562 kb on + strand, within GFF772 at 128.565 kb on - strand, within GFF772 at 128.565 kb on - strand, within GFF772 at 128.596 kb on + strand, within GFF772 at 128.597 kb on - strand, within GFF772 at 128.845 kb on + strand at 128.846 kb on - strand at 128.865 kb on + strand at 128.865 kb on + strand at 128.866 kb on - strand at 128.866 kb on - strand at 128.880 kb on + strand at 128.955 kb on + strand at 128.981 kb on - strand at 129.169 kb on + strand, within GFF773 at 129.569 kb on - strand at 129.569 kb on - strand at 129.593 kb on - strand at 129.594 kb on + strand at 129.597 kb on - strand at 129.619 kb on - strand at 129.724 kb on - strand at 129.746 kb on - strand at 129.751 kb on + strand at 129.752 kb on - strand at 129.752 kb on - strand at 129.752 kb on - strand at 129.790 kb on + strand at 129.795 kb on + strand at 129.796 kb on - strand at 129.796 kb on - strand at 129.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 127,215 - GFF770 0.81 -0.3 127,269 - GFF770 0.88 +0.0 127,360 - -0.0 127,379 - -0.3 127,464 - GFF771 0.14 -0.6 127,511 - GFF771 0.21 -0.2 127,511 - GFF771 0.21 -0.0 127,531 + GFF771 0.24 +0.2 127,698 - GFF771 0.46 -0.2 127,737 + GFF771 0.52 +0.1 127,925 - GFF771 0.77 +0.2 127,972 + GFF771 0.84 +0.3 127,973 - GFF771 0.84 +0.4 127,973 - GFF771 0.84 -0.3 128,562 + GFF772 0.62 -0.2 128,565 - GFF772 0.63 -0.9 128,565 - GFF772 0.63 -0.4 128,596 + GFF772 0.67 -0.1 128,597 - GFF772 0.67 +0.2 128,845 + +0.7 128,846 - -0.1 128,865 + +0.6 128,865 + +0.2 128,866 - +0.3 128,866 - -0.3 128,880 + +0.1 128,955 + +0.0 128,981 - +0.2 129,169 + GFF773 0.20 +0.3 129,569 - +0.4 129,569 - -0.1 129,593 - +0.1 129,594 + +0.7 129,597 - +0.3 129,619 - -0.1 129,724 - -0.4 129,746 - +0.2 129,751 + +0.0 129,752 - -0.5 129,752 - -0.3 129,752 - +0.6 129,790 + -0.0 129,795 + -0.9 129,796 - -0.2 129,796 - -0.2 129,796 - -0.3
Or see this region's nucleotide sequence