Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF734

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF733 and GFF734 are separated by 712 nucleotidesGFF734 and GFF735 are separated by 22 nucleotidesGFF735 and GFF736 are separated by 10 nucleotides GFF733 - biofilm regulator BssR, at 92,149 to 92,532 GFF733 GFF734 - putative cytoplasmic protein, at 93,245 to 93,760 GFF734 GFF735 - Electron transfer flavoprotein, beta subunit, at 93,783 to 94,532 GFF735 GFF736 - Electron transfer flavoprotein, alpha subunit, at 94,543 to 95,490 GFF736 Position (kb) 93 94Strain fitness (log2 ratio) -1 0 1at 92.245 kb on + strand, within GFF733at 92.247 kb on + strand, within GFF733at 92.247 kb on + strand, within GFF733at 92.248 kb on - strand, within GFF733at 92.248 kb on - strand, within GFF733at 92.787 kb on - strandat 92.923 kb on + strandat 93.578 kb on - strand, within GFF734at 93.768 kb on - strandat 94.734 kb on - strand, within GFF736

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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92,245 + GFF733 0.25 +0.1
92,247 + GFF733 0.26 -0.6
92,247 + GFF733 0.26 -0.2
92,248 - GFF733 0.26 -0.1
92,248 - GFF733 0.26 +0.2
92,787 - +0.3
92,923 + -0.5
93,578 - GFF734 0.65 -0.6
93,768 - +0.8
94,734 - GFF736 0.20 +0.0

Or see this region's nucleotide sequence