Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF693 and GFF694 overlap by 8 nucleotides GFF694 and GFF695 overlap by 1 nucleotides GFF695 and GFF696 are separated by 229 nucleotides
GFF693 - ABC transporter multidrug efflux pump, fused ATP-binding domains, at 49,022 to 50,758
GFF693
GFF694 - Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG, at 50,751 to 51,746
GFF694
GFF695 - Transcriptional regulator YbiH, TetR family, at 51,746 to 52,420
GFF695
GFF696 - ATP-dependent RNA helicase RhlE, at 52,650 to 54,014
GFF696
Position (kb)
51
52
53 Strain fitness (log2 ratio)
-1
0
1 at 51.013 kb on + strand, within GFF694 at 51.051 kb on + strand, within GFF694 at 51.457 kb on + strand, within GFF694 at 51.555 kb on - strand, within GFF694 at 51.641 kb on - strand, within GFF694 at 51.673 kb on + strand at 51.781 kb on + strand at 51.781 kb on + strand at 51.782 kb on - strand at 51.782 kb on - strand at 51.916 kb on + strand, within GFF695 at 51.935 kb on - strand, within GFF695 at 52.099 kb on + strand, within GFF695 at 52.248 kb on - strand, within GFF695 at 52.277 kb on - strand, within GFF695 at 52.415 kb on - strand at 52.645 kb on + strand at 52.649 kb on + strand at 52.649 kb on + strand at 52.650 kb on - strand at 52.682 kb on + strand at 52.721 kb on + strand at 52.722 kb on - strand at 52.947 kb on - strand, within GFF696 at 53.130 kb on - strand, within GFF696
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 51,013 + GFF694 0.26 -0.1 51,051 + GFF694 0.30 -0.0 51,457 + GFF694 0.71 +1.1 51,555 - GFF694 0.81 -0.1 51,641 - GFF694 0.89 -0.0 51,673 + -0.7 51,781 + -0.4 51,781 + +0.4 51,782 - -0.1 51,782 - -0.5 51,916 + GFF695 0.25 -0.2 51,935 - GFF695 0.28 -0.1 52,099 + GFF695 0.52 +1.7 52,248 - GFF695 0.74 +0.3 52,277 - GFF695 0.79 -0.2 52,415 - +0.1 52,645 + +0.3 52,649 + +1.4 52,649 + +0.6 52,650 - +0.3 52,682 + -0.1 52,721 + +0.2 52,722 - +0.3 52,947 - GFF696 0.22 +0.2 53,130 - GFF696 0.35 +0.8
Or see this region's nucleotide sequence