Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF672 and GFF673 overlap by 17 nucleotides GFF673 and GFF674 overlap by 8 nucleotides
GFF672 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 28,271 to 29,428
GFF672
GFF673 - Biotin synthesis protein BioC, at 29,412 to 30,167
GFF673
GFF674 - Dethiobiotin synthetase (EC 6.3.3.3), at 30,160 to 30,846
GFF674
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1 at 28.425 kb on + strand, within GFF672 at 28.585 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.803 kb on - strand, within GFF672 at 28.803 kb on - strand, within GFF672 at 28.803 kb on - strand, within GFF672 at 29.426 kb on + strand at 29.426 kb on + strand at 29.577 kb on - strand, within GFF673 at 29.577 kb on - strand, within GFF673 at 29.577 kb on - strand, within GFF673 at 29.790 kb on + strand, within GFF673 at 29.791 kb on - strand, within GFF673 at 30.080 kb on + strand, within GFF673 at 30.197 kb on - strand at 30.249 kb on - strand, within GFF674 at 30.249 kb on - strand, within GFF674 at 30.264 kb on - strand, within GFF674 at 30.264 kb on - strand, within GFF674 at 30.268 kb on + strand, within GFF674 at 30.268 kb on + strand, within GFF674 at 30.271 kb on - strand, within GFF674 at 30.384 kb on + strand, within GFF674 at 30.399 kb on + strand, within GFF674 at 30.399 kb on + strand, within GFF674 at 30.525 kb on + strand, within GFF674 at 30.615 kb on + strand, within GFF674 at 30.615 kb on + strand, within GFF674 at 30.616 kb on - strand, within GFF674 at 30.618 kb on + strand, within GFF674 at 30.692 kb on + strand, within GFF674 at 30.693 kb on - strand, within GFF674 at 30.693 kb on - strand, within GFF674 at 30.815 kb on - strand at 30.826 kb on - strand at 31.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 28,425 + GFF672 0.13 +0.0 28,585 + GFF672 0.27 -0.3 28,802 + GFF672 0.46 +0.0 28,802 + GFF672 0.46 -0.3 28,802 + GFF672 0.46 -1.2 28,802 + GFF672 0.46 +0.1 28,803 - GFF672 0.46 +0.4 28,803 - GFF672 0.46 +0.6 28,803 - GFF672 0.46 +0.4 29,426 + +0.3 29,426 + -0.4 29,577 - GFF673 0.22 +0.3 29,577 - GFF673 0.22 +0.6 29,577 - GFF673 0.22 -0.1 29,790 + GFF673 0.50 +0.4 29,791 - GFF673 0.50 -0.1 30,080 + GFF673 0.88 +0.3 30,197 - -0.3 30,249 - GFF674 0.13 -0.0 30,249 - GFF674 0.13 -0.1 30,264 - GFF674 0.15 +0.5 30,264 - GFF674 0.15 -0.2 30,268 + GFF674 0.16 +0.2 30,268 + GFF674 0.16 +0.3 30,271 - GFF674 0.16 +0.4 30,384 + GFF674 0.33 +0.1 30,399 + GFF674 0.35 +0.1 30,399 + GFF674 0.35 +0.2 30,525 + GFF674 0.53 +0.9 30,615 + GFF674 0.66 -1.3 30,615 + GFF674 0.66 +0.1 30,616 - GFF674 0.66 +1.0 30,618 + GFF674 0.67 -0.2 30,692 + GFF674 0.77 +1.4 30,693 - GFF674 0.78 +0.0 30,693 - GFF674 0.78 -0.7 30,815 - -0.1 30,826 - +0.7 31,109 - +0.1
Or see this region's nucleotide sequence