Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF672

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF671 and GFF672 overlap by 4 nucleotidesGFF672 and GFF673 overlap by 17 nucleotidesGFF673 and GFF674 overlap by 8 nucleotides GFF671 - Biotin synthase (EC 2.8.1.6), at 27,234 to 28,274 GFF671 GFF672 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 28,271 to 29,428 GFF672 GFF673 - Biotin synthesis protein BioC, at 29,412 to 30,167 GFF673 GFF674 - Dethiobiotin synthetase (EC 6.3.3.3), at 30,160 to 30,846 GFF674 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 27.353 kb on - strand, within GFF671at 27.362 kb on + strand, within GFF671at 27.363 kb on - strand, within GFF671at 27.404 kb on + strand, within GFF671at 27.405 kb on - strand, within GFF671at 27.467 kb on - strand, within GFF671at 27.476 kb on - strand, within GFF671at 27.681 kb on + strand, within GFF671at 27.681 kb on + strand, within GFF671at 27.723 kb on - strand, within GFF671at 27.738 kb on - strand, within GFF671at 27.741 kb on + strand, within GFF671at 27.741 kb on + strand, within GFF671at 27.742 kb on - strand, within GFF671at 27.788 kb on + strand, within GFF671at 27.789 kb on - strand, within GFF671at 27.789 kb on - strand, within GFF671at 28.005 kb on + strand, within GFF671at 28.005 kb on + strand, within GFF671at 28.151 kb on + strand, within GFF671at 28.254 kb on + strandat 28.255 kb on - strandat 28.324 kb on + strandat 28.341 kb on - strandat 28.341 kb on - strandat 28.391 kb on + strand, within GFF672at 28.391 kb on + strand, within GFF672at 28.392 kb on - strand, within GFF672at 28.397 kb on - strand, within GFF672at 28.425 kb on + strand, within GFF672at 28.585 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.803 kb on - strand, within GFF672at 28.803 kb on - strand, within GFF672at 28.803 kb on - strand, within GFF672at 29.426 kb on + strandat 29.426 kb on + strandat 29.577 kb on - strand, within GFF673at 29.577 kb on - strand, within GFF673at 29.577 kb on - strand, within GFF673at 29.790 kb on + strand, within GFF673at 29.791 kb on - strand, within GFF673at 30.080 kb on + strand, within GFF673at 30.197 kb on - strandat 30.249 kb on - strand, within GFF674at 30.249 kb on - strand, within GFF674at 30.264 kb on - strand, within GFF674at 30.264 kb on - strand, within GFF674at 30.268 kb on + strand, within GFF674at 30.268 kb on + strand, within GFF674at 30.271 kb on - strand, within GFF674at 30.384 kb on + strand, within GFF674at 30.399 kb on + strand, within GFF674at 30.399 kb on + strand, within GFF674

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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27,353 - GFF671 0.11 -0.1
27,362 + GFF671 0.12 +0.5
27,363 - GFF671 0.12 +0.0
27,404 + GFF671 0.16 +0.2
27,405 - GFF671 0.16 +0.2
27,467 - GFF671 0.22 -0.8
27,476 - GFF671 0.23 -1.7
27,681 + GFF671 0.43 +0.0
27,681 + GFF671 0.43 -0.3
27,723 - GFF671 0.47 +0.2
27,738 - GFF671 0.48 -0.1
27,741 + GFF671 0.49 +0.4
27,741 + GFF671 0.49 +0.2
27,742 - GFF671 0.49 +0.1
27,788 + GFF671 0.53 -0.1
27,789 - GFF671 0.53 +0.4
27,789 - GFF671 0.53 +0.5
28,005 + GFF671 0.74 +0.2
28,005 + GFF671 0.74 +0.4
28,151 + GFF671 0.88 -1.5
28,254 + +0.0
28,255 - +0.0
28,324 + -0.4
28,341 - +0.0
28,341 - -0.0
28,391 + GFF672 0.10 +0.0
28,391 + GFF672 0.10 +1.1
28,392 - GFF672 0.10 +0.1
28,397 - GFF672 0.11 -2.5
28,425 + GFF672 0.13 +0.0
28,585 + GFF672 0.27 -0.3
28,802 + GFF672 0.46 +0.0
28,802 + GFF672 0.46 -0.3
28,802 + GFF672 0.46 -1.2
28,802 + GFF672 0.46 +0.1
28,803 - GFF672 0.46 +0.4
28,803 - GFF672 0.46 +0.6
28,803 - GFF672 0.46 +0.4
29,426 + +0.3
29,426 + -0.4
29,577 - GFF673 0.22 +0.3
29,577 - GFF673 0.22 +0.6
29,577 - GFF673 0.22 -0.1
29,790 + GFF673 0.50 +0.4
29,791 - GFF673 0.50 -0.1
30,080 + GFF673 0.88 +0.3
30,197 - -0.3
30,249 - GFF674 0.13 -0.0
30,249 - GFF674 0.13 -0.1
30,264 - GFF674 0.15 +0.5
30,264 - GFF674 0.15 -0.2
30,268 + GFF674 0.16 +0.2
30,268 + GFF674 0.16 +0.3
30,271 - GFF674 0.16 +0.4
30,384 + GFF674 0.33 +0.1
30,399 + GFF674 0.35 +0.1
30,399 + GFF674 0.35 +0.2

Or see this region's nucleotide sequence