Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF659 and GFF660 are separated by 0 nucleotides GFF660 and GFF661 are separated by 121 nucleotides
GFF659 - Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1), at 14,204 to 15,262
GFF659
GFF660 - Putative phosphatase, at 15,263 to 16,123
GFF660
GFF661 - 6-phosphogluconolactonase (EC 3.1.1.31), at 16,245 to 17,240
GFF661
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 14.475 kb on - strand, within GFF659 at 14.703 kb on + strand, within GFF659 at 14.712 kb on - strand, within GFF659 at 14.712 kb on - strand, within GFF659 at 14.754 kb on - strand, within GFF659 at 15.020 kb on - strand, within GFF659 at 15.025 kb on + strand, within GFF659 at 15.028 kb on - strand, within GFF659 at 15.055 kb on - strand, within GFF659 at 15.087 kb on + strand, within GFF659 at 15.113 kb on + strand, within GFF659 at 15.114 kb on - strand, within GFF659 at 15.228 kb on - strand at 15.266 kb on + strand at 15.413 kb on - strand, within GFF660 at 15.665 kb on - strand, within GFF660 at 15.713 kb on - strand, within GFF660 at 15.762 kb on + strand, within GFF660 at 15.762 kb on + strand, within GFF660 at 15.762 kb on + strand, within GFF660 at 15.763 kb on - strand, within GFF660 at 15.763 kb on - strand, within GFF660 at 15.763 kb on - strand, within GFF660 at 15.763 kb on - strand, within GFF660 at 15.794 kb on + strand, within GFF660 at 15.935 kb on - strand, within GFF660 at 16.028 kb on - strand, within GFF660 at 16.041 kb on - strand at 16.105 kb on + strand at 16.196 kb on - strand at 16.240 kb on + strand at 16.241 kb on - strand at 16.390 kb on - strand, within GFF661 at 16.396 kb on - strand, within GFF661 at 16.436 kb on + strand, within GFF661 at 16.437 kb on - strand, within GFF661 at 16.503 kb on - strand, within GFF661 at 16.548 kb on - strand, within GFF661 at 16.815 kb on + strand, within GFF661 at 16.900 kb on - strand, within GFF661 at 16.950 kb on - strand, within GFF661 at 16.975 kb on - strand, within GFF661 at 16.975 kb on - strand, within GFF661 at 17.012 kb on + strand, within GFF661 at 17.036 kb on - strand, within GFF661
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 14,475 - GFF659 0.26 +0.5 14,703 + GFF659 0.47 -0.8 14,712 - GFF659 0.48 +0.6 14,712 - GFF659 0.48 +0.8 14,754 - GFF659 0.52 -1.0 15,020 - GFF659 0.77 +0.5 15,025 + GFF659 0.78 +0.1 15,028 - GFF659 0.78 -0.2 15,055 - GFF659 0.80 +0.3 15,087 + GFF659 0.83 -0.5 15,113 + GFF659 0.86 +1.6 15,114 - GFF659 0.86 -0.1 15,228 - -1.1 15,266 + +0.1 15,413 - GFF660 0.17 +0.4 15,665 - GFF660 0.47 +1.0 15,713 - GFF660 0.52 -0.9 15,762 + GFF660 0.58 +0.9 15,762 + GFF660 0.58 +1.0 15,762 + GFF660 0.58 +0.1 15,763 - GFF660 0.58 -0.3 15,763 - GFF660 0.58 +0.7 15,763 - GFF660 0.58 +0.0 15,763 - GFF660 0.58 -0.2 15,794 + GFF660 0.62 +0.6 15,935 - GFF660 0.78 +0.1 16,028 - GFF660 0.89 +0.0 16,041 - +0.2 16,105 + +0.1 16,196 - +0.6 16,240 + +0.3 16,241 - -1.0 16,390 - GFF661 0.15 -0.3 16,396 - GFF661 0.15 -0.5 16,436 + GFF661 0.19 -1.8 16,437 - GFF661 0.19 +0.3 16,503 - GFF661 0.26 -0.5 16,548 - GFF661 0.30 -0.2 16,815 + GFF661 0.57 +0.0 16,900 - GFF661 0.66 -0.3 16,950 - GFF661 0.71 -0.4 16,975 - GFF661 0.73 +0.3 16,975 - GFF661 0.73 -0.2 17,012 + GFF661 0.77 +0.2 17,036 - GFF661 0.79 -1.3
Or see this region's nucleotide sequence