Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF633 and GFF634 overlap by 8 nucleotides GFF634 and GFF635 overlap by 8 nucleotides GFF635 and GFF636 are separated by 144 nucleotides
GFF633 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 374,410 to 375,087
GFF633
GFF634 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 375,080 to 375,838
GFF634
GFF635 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 375,831 to 376,835
GFF635
GFF636 - putative outer membrane lipoprotein, at 376,980 to 377,150
GFF636
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1 at 375.085 kb on + strand at 375.331 kb on + strand, within GFF634 at 375.331 kb on + strand, within GFF634 at 375.331 kb on + strand, within GFF634 at 375.332 kb on - strand, within GFF634 at 375.352 kb on - strand, within GFF634 at 375.355 kb on + strand, within GFF634 at 375.356 kb on - strand, within GFF634 at 375.380 kb on + strand, within GFF634 at 375.380 kb on + strand, within GFF634 at 375.468 kb on + strand, within GFF634 at 375.537 kb on - strand, within GFF634 at 375.574 kb on + strand, within GFF634 at 375.713 kb on + strand, within GFF634 at 375.714 kb on - strand, within GFF634 at 375.719 kb on + strand, within GFF634 at 375.725 kb on + strand, within GFF634 at 375.764 kb on + strand at 375.776 kb on - strand at 375.836 kb on + strand at 375.891 kb on + strand at 375.891 kb on + strand at 375.946 kb on - strand, within GFF635 at 375.968 kb on + strand, within GFF635 at 375.998 kb on - strand, within GFF635 at 376.002 kb on - strand, within GFF635 at 376.123 kb on - strand, within GFF635 at 376.124 kb on + strand, within GFF635 at 376.124 kb on + strand, within GFF635 at 376.129 kb on - strand, within GFF635 at 376.167 kb on - strand, within GFF635 at 376.533 kb on + strand, within GFF635 at 376.874 kb on + strand at 376.875 kb on - strand at 376.886 kb on + strand at 376.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 375,085 + -0.5 375,331 + GFF634 0.33 -0.4 375,331 + GFF634 0.33 +0.2 375,331 + GFF634 0.33 -0.3 375,332 - GFF634 0.33 +0.0 375,352 - GFF634 0.36 -0.0 375,355 + GFF634 0.36 -0.2 375,356 - GFF634 0.36 -2.2 375,380 + GFF634 0.40 -0.1 375,380 + GFF634 0.40 +1.0 375,468 + GFF634 0.51 +0.2 375,537 - GFF634 0.60 +0.2 375,574 + GFF634 0.65 +0.4 375,713 + GFF634 0.83 -0.9 375,714 - GFF634 0.84 +0.7 375,719 + GFF634 0.84 -0.3 375,725 + GFF634 0.85 -0.2 375,764 + -0.6 375,776 - -1.0 375,836 + -1.3 375,891 + -1.3 375,891 + -1.7 375,946 - GFF635 0.11 -0.6 375,968 + GFF635 0.14 -1.1 375,998 - GFF635 0.17 -1.5 376,002 - GFF635 0.17 +0.0 376,123 - GFF635 0.29 -1.9 376,124 + GFF635 0.29 -0.8 376,124 + GFF635 0.29 -1.2 376,129 - GFF635 0.30 -1.3 376,167 - GFF635 0.33 -0.1 376,533 + GFF635 0.70 -0.9 376,874 + +0.4 376,875 - +0.5 376,886 + -0.0 376,886 + +0.2
Or see this region's nucleotide sequence