Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF635
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
375,085 | + | -0.5 | |||
375,331 | + | GFF634 | 0.33 | -0.4 | |
375,331 | + | GFF634 | 0.33 | +0.2 | |
375,331 | + | GFF634 | 0.33 | -0.3 | |
375,332 | - | GFF634 | 0.33 | +0.0 | |
375,352 | - | GFF634 | 0.36 | -0.0 | |
375,355 | + | GFF634 | 0.36 | -0.2 | |
375,356 | - | GFF634 | 0.36 | -2.2 | |
375,380 | + | GFF634 | 0.40 | -0.1 | |
375,380 | + | GFF634 | 0.40 | +1.0 | |
375,468 | + | GFF634 | 0.51 | +0.2 | |
375,537 | - | GFF634 | 0.60 | +0.2 | |
375,574 | + | GFF634 | 0.65 | +0.4 | |
375,713 | + | GFF634 | 0.83 | -0.9 | |
375,714 | - | GFF634 | 0.84 | +0.7 | |
375,719 | + | GFF634 | 0.84 | -0.3 | |
375,725 | + | GFF634 | 0.85 | -0.2 | |
375,764 | + | -0.6 | |||
375,776 | - | -1.0 | |||
375,836 | + | -1.3 | |||
375,891 | + | -1.3 | |||
375,891 | + | -1.7 | |||
375,946 | - | GFF635 | 0.11 | -0.6 | |
375,968 | + | GFF635 | 0.14 | -1.1 | |
375,998 | - | GFF635 | 0.17 | -1.5 | |
376,002 | - | GFF635 | 0.17 | +0.0 | |
376,123 | - | GFF635 | 0.29 | -1.9 | |
376,124 | + | GFF635 | 0.29 | -0.8 | |
376,124 | + | GFF635 | 0.29 | -1.2 | |
376,129 | - | GFF635 | 0.30 | -1.3 | |
376,167 | - | GFF635 | 0.33 | -0.1 | |
376,533 | + | GFF635 | 0.70 | -0.9 | |
376,874 | + | +0.4 | |||
376,875 | - | +0.5 | |||
376,886 | + | -0.0 | |||
376,886 | + | +0.2 |
Or see this region's nucleotide sequence