Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF61 and GFF62 are separated by 84 nucleotides GFF62 and GFF63 are separated by 4 nucleotides GFF63 and GFF64 are separated by 36 nucleotides GFF64 and GFF65 are separated by 100 nucleotides
GFF61 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1, at 44,727 to 46,244
GFF61
GFF62 - '5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)' transl_table=11, at 46,329 to 47,027
GFF62
GFF63 - Vitamin B12 ABC transporter, B12-binding component BtuF, at 47,032 to 47,820
GFF63
GFF64 - Putative inner membrane protein, at 47,857 to 48,480
GFF64
GFF65 - ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family, at 48,581 to 48,925
GFF65
Position (kb) 47
48 Strain fitness (log2 ratio) -1
0
1 at 46.053 kb on - strand, within GFF61 at 46.053 kb on - strand, within GFF61 at 46.111 kb on - strand at 46.113 kb on - strand at 46.127 kb on + strand at 46.294 kb on + strand at 47.318 kb on + strand, within GFF63 at 47.318 kb on + strand, within GFF63 at 47.326 kb on - strand, within GFF63 at 47.467 kb on + strand, within GFF63 at 47.524 kb on - strand, within GFF63 at 47.532 kb on + strand, within GFF63 at 47.533 kb on - strand, within GFF63 at 47.699 kb on - strand, within GFF63 at 47.796 kb on + strand at 47.797 kb on - strand at 47.883 kb on - strand at 47.895 kb on - strand at 48.072 kb on + strand, within GFF64 at 48.072 kb on + strand, within GFF64 at 48.178 kb on - strand, within GFF64 at 48.206 kb on + strand, within GFF64 at 48.305 kb on - strand, within GFF64 at 48.319 kb on - strand, within GFF64 at 48.319 kb on - strand, within GFF64 at 48.354 kb on + strand, within GFF64 at 48.354 kb on + strand, within GFF64 at 48.481 kb on + strand at 48.481 kb on + strand at 48.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 46,053 - GFF61 0.87 +0.3 46,053 - GFF61 0.87 -0.1 46,111 - -0.1 46,113 - -0.1 46,127 + +0.6 46,294 + +0.2 47,318 + GFF63 0.36 -0.6 47,318 + GFF63 0.36 -0.1 47,326 - GFF63 0.37 -0.3 47,467 + GFF63 0.55 -1.1 47,524 - GFF63 0.62 -0.3 47,532 + GFF63 0.63 +0.2 47,533 - GFF63 0.63 -0.3 47,699 - GFF63 0.85 +0.8 47,796 + -0.1 47,797 - +0.2 47,883 - -0.2 47,895 - -0.4 48,072 + GFF64 0.34 +0.3 48,072 + GFF64 0.34 -0.2 48,178 - GFF64 0.51 -0.1 48,206 + GFF64 0.56 -0.5 48,305 - GFF64 0.72 -0.0 48,319 - GFF64 0.74 -0.9 48,319 - GFF64 0.74 +0.4 48,354 + GFF64 0.80 -0.4 48,354 + GFF64 0.80 -0.3 48,481 + -0.3 48,481 + -0.7 48,534 - +0.3
Or see this region's nucleotide sequence