Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF596 and GFF597 are separated by 108 nucleotides GFF597 and GFF598 are separated by 2 nucleotides GFF598 and GFF599 are separated by 87 nucleotides
GFF596 - 'RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)' transl_table=11, at 331,720 to 332,739
GFF596
GFF597 - DNA-damage-inducible protein J, at 332,848 to 333,108
GFF597
GFF598 - YafQ toxin protein, at 333,111 to 333,386
GFF598
GFF599 - Transcriptional activator of maltose regulon, MalT, at 333,474 to 336,179
GFF599
Position (kb) 332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 331.982 kb on - strand, within GFF596 at 332.656 kb on - strand at 332.737 kb on + strand at 332.748 kb on + strand at 332.786 kb on - strand at 332.819 kb on + strand at 332.832 kb on + strand at 333.017 kb on + strand, within GFF597 at 333.018 kb on - strand, within GFF597 at 333.039 kb on + strand, within GFF597 at 333.179 kb on + strand, within GFF598 at 333.180 kb on - strand, within GFF598 at 333.180 kb on - strand, within GFF598 at 333.207 kb on - strand, within GFF598 at 333.251 kb on + strand, within GFF598 at 333.252 kb on - strand, within GFF598 at 333.320 kb on + strand, within GFF598 at 333.321 kb on - strand, within GFF598 at 333.326 kb on + strand, within GFF598 at 333.384 kb on + strand at 333.406 kb on - strand at 333.578 kb on + strand at 333.755 kb on + strand, within GFF599 at 333.915 kb on + strand, within GFF599 at 333.982 kb on - strand, within GFF599
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 331,982 - GFF596 0.26 -0.1 332,656 - -0.2 332,737 + -0.3 332,748 + -0.1 332,786 - -0.1 332,819 + +0.1 332,832 + +0.2 333,017 + GFF597 0.65 -3.0 333,018 - GFF597 0.65 -0.1 333,039 + GFF597 0.73 -3.6 333,179 + GFF598 0.25 -0.1 333,180 - GFF598 0.25 -0.2 333,180 - GFF598 0.25 +0.6 333,207 - GFF598 0.35 -0.7 333,251 + GFF598 0.51 +0.5 333,252 - GFF598 0.51 -0.1 333,320 + GFF598 0.76 +0.1 333,321 - GFF598 0.76 +0.2 333,326 + GFF598 0.78 -1.1 333,384 + -0.0 333,406 - +0.2 333,578 + +1.3 333,755 + GFF599 0.10 -1.3 333,915 + GFF599 0.16 -1.9 333,982 - GFF599 0.19 +0.2
Or see this region's nucleotide sequence