Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF597
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
331,982 | - | GFF596 | 0.26 | -0.1 | |
332,656 | - | -0.2 | |||
332,737 | + | -0.3 | |||
332,748 | + | -0.1 | |||
332,786 | - | -0.1 | |||
332,819 | + | +0.1 | |||
332,832 | + | +0.2 | |||
333,017 | + | GFF597 | 0.65 | -3.0 | |
333,018 | - | GFF597 | 0.65 | -0.1 | |
333,039 | + | GFF597 | 0.73 | -3.6 | |
333,179 | + | GFF598 | 0.25 | -0.1 | |
333,180 | - | GFF598 | 0.25 | -0.2 | |
333,180 | - | GFF598 | 0.25 | +0.6 | |
333,207 | - | GFF598 | 0.35 | -0.7 | |
333,251 | + | GFF598 | 0.51 | +0.5 | |
333,252 | - | GFF598 | 0.51 | -0.1 | |
333,320 | + | GFF598 | 0.76 | +0.1 | |
333,321 | - | GFF598 | 0.76 | +0.2 | |
333,326 | + | GFF598 | 0.78 | -1.1 | |
333,384 | + | -0.0 | |||
333,406 | - | +0.2 | |||
333,578 | + | +1.3 | |||
333,755 | + | GFF599 | 0.10 | -1.3 | |
333,915 | + | GFF599 | 0.16 | -1.9 | |
333,982 | - | GFF599 | 0.19 | +0.2 |
Or see this region's nucleotide sequence