Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF584 and GFF585 are separated by 192 nucleotides GFF585 and GFF586 are separated by 9 nucleotides GFF586 and GFF587 are separated by 46 nucleotides
GFF584 - Glycerol dehydrogenase (EC 1.1.1.6), at 319,476 to 320,585
GFF584
GFF585 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 320,778 to 322,238
GFF585
GFF586 - Putative inner membrane protein, at 322,248 to 322,793
GFF586
GFF587 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 322,840 to 324,348
GFF587
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -2
-1
0
1 at 319.820 kb on + strand, within GFF584 at 319.862 kb on + strand, within GFF584 at 319.867 kb on - strand, within GFF584 at 319.893 kb on + strand, within GFF584 at 319.911 kb on - strand, within GFF584 at 319.940 kb on + strand, within GFF584 at 319.941 kb on - strand, within GFF584 at 319.941 kb on - strand, within GFF584 at 319.941 kb on - strand, within GFF584 at 320.094 kb on + strand, within GFF584 at 320.105 kb on - strand, within GFF584 at 320.105 kb on - strand, within GFF584 at 320.112 kb on + strand, within GFF584 at 320.187 kb on - strand, within GFF584 at 320.187 kb on - strand, within GFF584 at 320.192 kb on - strand, within GFF584 at 320.280 kb on + strand, within GFF584 at 320.324 kb on + strand, within GFF584 at 320.325 kb on - strand, within GFF584 at 320.325 kb on - strand, within GFF584 at 320.383 kb on + strand, within GFF584 at 320.383 kb on + strand, within GFF584 at 320.705 kb on + strand at 320.707 kb on + strand at 320.708 kb on - strand at 320.776 kb on + strand at 320.813 kb on + strand at 320.814 kb on - strand at 320.844 kb on + strand at 320.844 kb on + strand at 321.012 kb on - strand, within GFF585 at 321.012 kb on - strand, within GFF585 at 321.068 kb on + strand, within GFF585 at 321.069 kb on - strand, within GFF585 at 321.090 kb on - strand, within GFF585 at 321.124 kb on + strand, within GFF585 at 321.137 kb on - strand, within GFF585 at 321.213 kb on + strand, within GFF585 at 321.214 kb on - strand, within GFF585 at 321.313 kb on - strand, within GFF585 at 321.328 kb on - strand, within GFF585 at 321.364 kb on - strand, within GFF585 at 321.549 kb on + strand, within GFF585 at 321.611 kb on + strand, within GFF585 at 321.667 kb on + strand, within GFF585 at 321.679 kb on - strand, within GFF585 at 321.710 kb on + strand, within GFF585 at 321.822 kb on - strand, within GFF585 at 321.877 kb on + strand, within GFF585 at 322.002 kb on + strand, within GFF585 at 322.002 kb on + strand, within GFF585 at 322.034 kb on + strand, within GFF585 at 322.034 kb on + strand, within GFF585 at 322.092 kb on + strand, within GFF585 at 322.099 kb on - strand at 322.114 kb on - strand at 322.115 kb on + strand at 322.116 kb on - strand at 322.209 kb on + strand at 322.210 kb on - strand at 322.210 kb on - strand at 322.343 kb on + strand, within GFF586 at 322.349 kb on + strand, within GFF586 at 322.349 kb on + strand, within GFF586 at 322.438 kb on + strand, within GFF586 at 322.642 kb on - strand, within GFF586 at 322.670 kb on + strand, within GFF586 at 322.733 kb on - strand, within GFF586 at 322.751 kb on + strand at 322.752 kb on - strand at 322.763 kb on + strand at 322.763 kb on + strand at 322.800 kb on + strand at 322.801 kb on - strand at 322.801 kb on - strand at 322.822 kb on - strand at 322.842 kb on - strand at 322.950 kb on + strand at 323.100 kb on - strand, within GFF587
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 319,820 + GFF584 0.31 +1.1 319,862 + GFF584 0.35 -0.0 319,867 - GFF584 0.35 +0.3 319,893 + GFF584 0.38 -0.2 319,911 - GFF584 0.39 -0.1 319,940 + GFF584 0.42 +0.3 319,941 - GFF584 0.42 +0.1 319,941 - GFF584 0.42 -0.5 319,941 - GFF584 0.42 -0.3 320,094 + GFF584 0.56 +0.1 320,105 - GFF584 0.57 -0.0 320,105 - GFF584 0.57 +0.4 320,112 + GFF584 0.57 -0.2 320,187 - GFF584 0.64 +0.0 320,187 - GFF584 0.64 -0.3 320,192 - GFF584 0.65 +0.0 320,280 + GFF584 0.72 +0.1 320,324 + GFF584 0.76 -0.4 320,325 - GFF584 0.76 -0.6 320,325 - GFF584 0.76 -0.5 320,383 + GFF584 0.82 +1.3 320,383 + GFF584 0.82 -0.4 320,705 + +0.5 320,707 + +0.6 320,708 - -0.1 320,776 + -0.1 320,813 + +0.0 320,814 - -0.3 320,844 + +0.4 320,844 + -0.7 321,012 - GFF585 0.16 -0.3 321,012 - GFF585 0.16 -0.1 321,068 + GFF585 0.20 -0.1 321,069 - GFF585 0.20 -1.1 321,090 - GFF585 0.21 +1.1 321,124 + GFF585 0.24 -0.1 321,137 - GFF585 0.25 +0.1 321,213 + GFF585 0.30 -0.1 321,214 - GFF585 0.30 +0.3 321,313 - GFF585 0.37 -0.1 321,328 - GFF585 0.38 -2.0 321,364 - GFF585 0.40 -0.8 321,549 + GFF585 0.53 -1.6 321,611 + GFF585 0.57 -0.5 321,667 + GFF585 0.61 -0.3 321,679 - GFF585 0.62 -0.3 321,710 + GFF585 0.64 -1.1 321,822 - GFF585 0.71 -0.1 321,877 + GFF585 0.75 +0.2 322,002 + GFF585 0.84 -0.3 322,002 + GFF585 0.84 -0.4 322,034 + GFF585 0.86 -0.3 322,034 + GFF585 0.86 -0.5 322,092 + GFF585 0.90 +0.5 322,099 - -0.2 322,114 - +0.1 322,115 + -0.2 322,116 - +0.0 322,209 + +0.3 322,210 - -0.3 322,210 - -0.6 322,343 + GFF586 0.17 -0.1 322,349 + GFF586 0.18 +0.2 322,349 + GFF586 0.18 -0.7 322,438 + GFF586 0.35 -0.3 322,642 - GFF586 0.72 +0.3 322,670 + GFF586 0.77 -0.7 322,733 - GFF586 0.89 -0.2 322,751 + +0.2 322,752 - -0.4 322,763 + +0.5 322,763 + -0.3 322,800 + +0.1 322,801 - -0.1 322,801 - -0.7 322,822 - +0.4 322,842 - +0.2 322,950 + +1.7 323,100 - GFF587 0.17 -0.2
Or see this region's nucleotide sequence