Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF577

Experiment: Dictyostellum sp.mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF576 and GFF577 are separated by 14 nucleotidesGFF577 and GFF578 overlap by 1 nucleotides GFF576 - Glycogen debranching enzyme (EC 3.2.1.-), at 306,980 to 308,956 GFF576 GFF577 - Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27), at 308,971 to 310,266 GFF577 GFF578 - Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), at 310,266 to 311,699 GFF578 Position (kb) 308 309 310 311Strain fitness (log2 ratio) -2 -1 0 1at 308.396 kb on + strand, within GFF576at 308.396 kb on + strand, within GFF576at 308.443 kb on - strand, within GFF576at 308.443 kb on - strand, within GFF576at 308.557 kb on + strand, within GFF576at 308.671 kb on - strand, within GFF576at 308.680 kb on + strand, within GFF576at 308.681 kb on - strand, within GFF576at 308.767 kb on + strandat 308.767 kb on + strandat 308.768 kb on - strandat 308.836 kb on + strandat 308.836 kb on + strandat 308.836 kb on + strandat 308.836 kb on + strandat 308.839 kb on - strandat 308.982 kb on - strandat 309.000 kb on - strandat 309.038 kb on + strandat 309.039 kb on - strandat 309.144 kb on - strand, within GFF577at 309.193 kb on + strand, within GFF577at 309.193 kb on + strand, within GFF577at 309.220 kb on - strand, within GFF577at 309.291 kb on + strand, within GFF577at 309.351 kb on + strand, within GFF577at 309.351 kb on + strand, within GFF577at 309.352 kb on - strand, within GFF577at 309.374 kb on - strand, within GFF577at 309.400 kb on - strand, within GFF577at 309.400 kb on - strand, within GFF577at 309.403 kb on + strand, within GFF577at 309.404 kb on - strand, within GFF577at 309.424 kb on - strand, within GFF577at 309.424 kb on - strand, within GFF577at 309.472 kb on - strand, within GFF577at 309.640 kb on + strand, within GFF577at 309.641 kb on - strand, within GFF577at 309.800 kb on + strand, within GFF577at 309.800 kb on + strand, within GFF577at 309.801 kb on - strand, within GFF577at 309.801 kb on - strand, within GFF577at 309.804 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.891 kb on + strand, within GFF577at 309.892 kb on - strand, within GFF577at 309.898 kb on - strand, within GFF577at 309.951 kb on + strand, within GFF577at 309.988 kb on - strand, within GFF577at 309.988 kb on - strand, within GFF577at 310.038 kb on - strand, within GFF577at 310.053 kb on + strand, within GFF577at 310.107 kb on - strand, within GFF577at 310.134 kb on + strand, within GFF577at 310.135 kb on - strand, within GFF577at 310.209 kb on + strandat 310.209 kb on + strandat 310.276 kb on + strandat 310.276 kb on + strandat 310.282 kb on + strandat 310.283 kb on - strandat 310.461 kb on - strand, within GFF578at 310.485 kb on + strand, within GFF578at 310.485 kb on + strand, within GFF578at 310.486 kb on - strand, within GFF578at 310.486 kb on - strand, within GFF578at 310.565 kb on - strand, within GFF578at 310.565 kb on - strand, within GFF578at 310.566 kb on + strand, within GFF578at 310.572 kb on + strand, within GFF578at 310.573 kb on - strand, within GFF578at 310.603 kb on + strand, within GFF578at 310.758 kb on + strand, within GFF578at 310.758 kb on + strand, within GFF578at 310.817 kb on + strand, within GFF578at 310.873 kb on - strand, within GFF578at 310.875 kb on + strand, within GFF578at 310.886 kb on + strand, within GFF578at 310.886 kb on + strand, within GFF578at 310.887 kb on - strand, within GFF578at 310.888 kb on + strand, within GFF578at 310.909 kb on - strand, within GFF578at 310.909 kb on - strand, within GFF578at 310.923 kb on - strand, within GFF578at 310.996 kb on + strand, within GFF578

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
remove
308,396 + GFF576 0.72 +0.2
308,396 + GFF576 0.72 +0.8
308,443 - GFF576 0.74 -0.3
308,443 - GFF576 0.74 -0.6
308,557 + GFF576 0.80 -0.1
308,671 - GFF576 0.86 +0.4
308,680 + GFF576 0.86 -0.1
308,681 - GFF576 0.86 -0.0
308,767 + -0.4
308,767 + +0.2
308,768 - +0.5
308,836 + -0.1
308,836 + -0.1
308,836 + +0.3
308,836 + +0.3
308,839 - +0.0
308,982 - -0.0
309,000 - -0.3
309,038 + -0.0
309,039 - +0.4
309,144 - GFF577 0.13 +0.2
309,193 + GFF577 0.17 -0.1
309,193 + GFF577 0.17 -0.1
309,220 - GFF577 0.19 -0.0
309,291 + GFF577 0.25 +0.2
309,351 + GFF577 0.29 -0.6
309,351 + GFF577 0.29 -0.4
309,352 - GFF577 0.29 +0.6
309,374 - GFF577 0.31 +0.1
309,400 - GFF577 0.33 -0.7
309,400 - GFF577 0.33 +0.3
309,403 + GFF577 0.33 -0.4
309,404 - GFF577 0.33 +0.1
309,424 - GFF577 0.35 +0.4
309,424 - GFF577 0.35 +0.1
309,472 - GFF577 0.39 +0.2
309,640 + GFF577 0.52 -0.3
309,641 - GFF577 0.52 +0.0
309,800 + GFF577 0.64 -0.0
309,800 + GFF577 0.64 -0.1
309,801 - GFF577 0.64 -0.2
309,801 - GFF577 0.64 -0.2
309,804 + GFF577 0.64 +0.3
309,868 + GFF577 0.69 +0.1
309,868 + GFF577 0.69 -0.1
309,868 + GFF577 0.69 +0.1
309,868 + GFF577 0.69 +0.1
309,869 - GFF577 0.69 +0.1
309,869 - GFF577 0.69 -0.5
309,869 - GFF577 0.69 -0.0
309,869 - GFF577 0.69 +0.3
309,891 + GFF577 0.71 +0.4
309,892 - GFF577 0.71 -0.6
309,898 - GFF577 0.72 +0.0
309,951 + GFF577 0.76 -0.7
309,988 - GFF577 0.78 -0.3
309,988 - GFF577 0.78 -0.8
310,038 - GFF577 0.82 -0.4
310,053 + GFF577 0.83 -1.4
310,107 - GFF577 0.88 -0.6
310,134 + GFF577 0.90 +0.0
310,135 - GFF577 0.90 -2.4
310,209 + -0.0
310,209 + +0.2
310,276 + +0.5
310,276 + -0.1
310,282 + +0.3
310,283 - +0.2
310,461 - GFF578 0.14 -0.7
310,485 + GFF578 0.15 -0.5
310,485 + GFF578 0.15 -0.2
310,486 - GFF578 0.15 -0.3
310,486 - GFF578 0.15 -0.7
310,565 - GFF578 0.21 +0.5
310,565 - GFF578 0.21 -1.1
310,566 + GFF578 0.21 +0.3
310,572 + GFF578 0.21 +0.3
310,573 - GFF578 0.21 +0.1
310,603 + GFF578 0.24 -0.1
310,758 + GFF578 0.34 +0.0
310,758 + GFF578 0.34 -0.0
310,817 + GFF578 0.38 -0.7
310,873 - GFF578 0.42 -0.2
310,875 + GFF578 0.42 +0.8
310,886 + GFF578 0.43 -0.4
310,886 + GFF578 0.43 -0.2
310,887 - GFF578 0.43 -0.2
310,888 + GFF578 0.43 -0.6
310,909 - GFF578 0.45 +0.1
310,909 - GFF578 0.45 -0.1
310,923 - GFF578 0.46 -0.1
310,996 + GFF578 0.51 -0.5

Or see this region's nucleotide sequence