Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF574 and GFF575 are separated by 346 nucleotides GFF575 and GFF576 overlap by 4 nucleotides
GFF574 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 303,344 to 304,450
GFF574
GFF575 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 304,797 to 306,983
GFF575
GFF576 - Glycogen debranching enzyme (EC 3.2.1.-), at 306,980 to 308,956
GFF576
Position (kb) 304
305
306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 304.490 kb on + strand at 304.645 kb on + strand at 304.645 kb on + strand at 304.645 kb on + strand at 304.662 kb on + strand at 304.672 kb on - strand at 304.682 kb on + strand at 304.696 kb on + strand at 304.696 kb on + strand at 304.826 kb on + strand at 304.827 kb on - strand at 304.898 kb on - strand at 304.961 kb on + strand at 304.962 kb on - strand at 305.111 kb on - strand, within GFF575 at 305.316 kb on - strand, within GFF575 at 305.316 kb on - strand, within GFF575 at 305.400 kb on - strand, within GFF575 at 305.532 kb on + strand, within GFF575 at 305.532 kb on + strand, within GFF575 at 305.546 kb on - strand, within GFF575 at 305.546 kb on - strand, within GFF575 at 305.564 kb on + strand, within GFF575 at 305.919 kb on + strand, within GFF575 at 305.919 kb on + strand, within GFF575 at 305.920 kb on - strand, within GFF575 at 305.925 kb on + strand, within GFF575 at 305.926 kb on - strand, within GFF575 at 305.926 kb on - strand, within GFF575 at 305.971 kb on - strand, within GFF575 at 306.023 kb on + strand, within GFF575 at 306.030 kb on + strand, within GFF575 at 306.119 kb on + strand, within GFF575 at 306.231 kb on + strand, within GFF575 at 306.333 kb on + strand, within GFF575 at 306.454 kb on - strand, within GFF575 at 306.454 kb on - strand, within GFF575 at 306.455 kb on + strand, within GFF575 at 306.456 kb on + strand, within GFF575 at 306.457 kb on - strand, within GFF575 at 306.624 kb on + strand, within GFF575 at 306.635 kb on + strand, within GFF575 at 306.636 kb on - strand, within GFF575 at 306.636 kb on - strand, within GFF575 at 306.767 kb on + strand at 306.929 kb on + strand at 307.025 kb on + strand at 307.026 kb on - strand at 307.026 kb on - strand at 307.026 kb on - strand at 307.077 kb on + strand at 307.077 kb on + strand at 307.290 kb on + strand, within GFF576 at 307.385 kb on + strand, within GFF576 at 307.386 kb on - strand, within GFF576 at 307.440 kb on - strand, within GFF576 at 307.466 kb on + strand, within GFF576 at 307.494 kb on + strand, within GFF576 at 307.505 kb on + strand, within GFF576 at 307.505 kb on + strand, within GFF576 at 307.642 kb on + strand, within GFF576 at 307.642 kb on + strand, within GFF576 at 307.643 kb on - strand, within GFF576 at 307.768 kb on - strand, within GFF576 at 307.770 kb on + strand, within GFF576 at 307.834 kb on + strand, within GFF576 at 307.838 kb on + strand, within GFF576 at 307.838 kb on + strand, within GFF576 at 307.838 kb on + strand, within GFF576 at 307.839 kb on - strand, within GFF576 at 307.839 kb on - strand, within GFF576 at 307.839 kb on - strand, within GFF576 at 307.841 kb on + strand, within GFF576
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 304,490 + -0.4 304,645 + +0.2 304,645 + +0.4 304,645 + +0.2 304,662 + +0.3 304,672 - +0.5 304,682 + -0.6 304,696 + +0.4 304,696 + +0.5 304,826 + -1.5 304,827 - +0.3 304,898 - -0.4 304,961 + +0.1 304,962 - +0.1 305,111 - GFF575 0.14 +0.2 305,316 - GFF575 0.24 -0.0 305,316 - GFF575 0.24 +0.1 305,400 - GFF575 0.28 -0.2 305,532 + GFF575 0.34 +0.8 305,532 + GFF575 0.34 +0.4 305,546 - GFF575 0.34 +0.6 305,546 - GFF575 0.34 +1.6 305,564 + GFF575 0.35 +0.9 305,919 + GFF575 0.51 +0.1 305,919 + GFF575 0.51 -0.3 305,920 - GFF575 0.51 -0.1 305,925 + GFF575 0.52 -0.3 305,926 - GFF575 0.52 -0.4 305,926 - GFF575 0.52 +0.1 305,971 - GFF575 0.54 +0.9 306,023 + GFF575 0.56 +0.9 306,030 + GFF575 0.56 +0.6 306,119 + GFF575 0.60 +0.2 306,231 + GFF575 0.66 +0.1 306,333 + GFF575 0.70 -0.1 306,454 - GFF575 0.76 +1.0 306,454 - GFF575 0.76 +1.6 306,455 + GFF575 0.76 +0.2 306,456 + GFF575 0.76 -0.2 306,457 - GFF575 0.76 -1.9 306,624 + GFF575 0.84 -0.3 306,635 + GFF575 0.84 -0.5 306,636 - GFF575 0.84 +0.1 306,636 - GFF575 0.84 +0.6 306,767 + -0.3 306,929 + +1.5 307,025 + -0.2 307,026 - -0.2 307,026 - -0.1 307,026 - -0.7 307,077 + -1.1 307,077 + +0.5 307,290 + GFF576 0.16 +0.2 307,385 + GFF576 0.20 -0.4 307,386 - GFF576 0.21 -1.2 307,440 - GFF576 0.23 +0.0 307,466 + GFF576 0.25 -0.1 307,494 + GFF576 0.26 -0.2 307,505 + GFF576 0.27 -0.2 307,505 + GFF576 0.27 -0.1 307,642 + GFF576 0.33 -0.0 307,642 + GFF576 0.33 +0.4 307,643 - GFF576 0.34 -1.1 307,768 - GFF576 0.40 -0.7 307,770 + GFF576 0.40 -0.3 307,834 + GFF576 0.43 -0.2 307,838 + GFF576 0.43 +0.1 307,838 + GFF576 0.43 +0.4 307,838 + GFF576 0.43 +0.0 307,839 - GFF576 0.43 -0.5 307,839 - GFF576 0.43 -0.2 307,839 - GFF576 0.43 +0.2 307,841 + GFF576 0.44 +0.1
Or see this region's nucleotide sequence