Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF561 and GFF562 are separated by 44 nucleotides GFF562 and GFF563 overlap by 4 nucleotides
GFF561 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 290,874 to 292,616
GFF561
GFF562 - Puative phophotriesterase, at 292,661 to 293,695
GFF562
GFF563 - Putative inner membrane protein, at 293,692 to 294,663
GFF563
Position (kb) 292
293
294 Strain fitness (log2 ratio) -2
-1
0
1 at 291.681 kb on + strand, within GFF561 at 291.682 kb on - strand, within GFF561 at 291.789 kb on - strand, within GFF561 at 291.891 kb on + strand, within GFF561 at 291.891 kb on + strand, within GFF561 at 291.892 kb on - strand, within GFF561 at 292.068 kb on - strand, within GFF561 at 292.095 kb on + strand, within GFF561 at 292.274 kb on + strand, within GFF561 at 292.283 kb on + strand, within GFF561 at 292.541 kb on + strand at 292.652 kb on - strand at 292.662 kb on + strand at 292.687 kb on + strand at 292.694 kb on - strand at 292.712 kb on - strand at 292.741 kb on - strand at 292.823 kb on + strand, within GFF562 at 292.953 kb on - strand, within GFF562 at 292.972 kb on + strand, within GFF562 at 293.104 kb on + strand, within GFF562 at 293.129 kb on - strand, within GFF562 at 293.129 kb on - strand, within GFF562 at 293.162 kb on - strand, within GFF562 at 293.254 kb on + strand, within GFF562 at 293.287 kb on + strand, within GFF562 at 293.288 kb on - strand, within GFF562 at 293.319 kb on + strand, within GFF562 at 293.443 kb on + strand, within GFF562 at 293.580 kb on + strand, within GFF562 at 293.580 kb on + strand, within GFF562 at 293.673 kb on - strand at 293.735 kb on + strand at 293.802 kb on - strand, within GFF563 at 293.896 kb on + strand, within GFF563 at 294.061 kb on - strand, within GFF563 at 294.061 kb on - strand, within GFF563 at 294.061 kb on - strand, within GFF563 at 294.532 kb on + strand, within GFF563 at 294.547 kb on - strand, within GFF563 at 294.647 kb on + strand at 294.648 kb on - strand at 294.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 291,681 + GFF561 0.46 +1.1 291,682 - GFF561 0.46 +0.1 291,789 - GFF561 0.52 +1.0 291,891 + GFF561 0.58 +0.3 291,891 + GFF561 0.58 -2.7 291,892 - GFF561 0.58 +0.4 292,068 - GFF561 0.69 -0.1 292,095 + GFF561 0.70 -0.5 292,274 + GFF561 0.80 -0.1 292,283 + GFF561 0.81 -0.3 292,541 + +0.5 292,652 - +0.3 292,662 + -0.9 292,687 + +0.3 292,694 - +0.3 292,712 - +0.2 292,741 - -0.0 292,823 + GFF562 0.16 +0.3 292,953 - GFF562 0.28 -0.1 292,972 + GFF562 0.30 +0.5 293,104 + GFF562 0.43 +0.0 293,129 - GFF562 0.45 +0.1 293,129 - GFF562 0.45 +0.3 293,162 - GFF562 0.48 +0.1 293,254 + GFF562 0.57 +0.1 293,287 + GFF562 0.60 +0.4 293,288 - GFF562 0.61 +0.1 293,319 + GFF562 0.64 +0.8 293,443 + GFF562 0.76 +0.0 293,580 + GFF562 0.89 -0.1 293,580 + GFF562 0.89 +0.8 293,673 - -0.1 293,735 + +0.1 293,802 - GFF563 0.11 +0.4 293,896 + GFF563 0.21 +0.2 294,061 - GFF563 0.38 -0.1 294,061 - GFF563 0.38 +0.1 294,061 - GFF563 0.38 -0.1 294,532 + GFF563 0.86 -0.9 294,547 - GFF563 0.88 +0.0 294,647 + +0.4 294,648 - -0.5 294,676 - -0.1
Or see this region's nucleotide sequence