Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF555 and GFF556 are separated by 63 nucleotides GFF556 and GFF557 overlap by 4 nucleotides GFF557 and GFF558 are separated by 1 nucleotides
GFF555 - Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3), at 285,401 to 286,717
GFF555
GFF556 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 286,781 to 287,668
GFF556
GFF557 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 287,665 to 288,510
GFF557
GFF558 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 288,512 to 289,582
GFF558
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1
2
3 at 286.721 kb on + strand at 286.721 kb on + strand at 286.722 kb on - strand at 286.722 kb on - strand at 286.723 kb on + strand at 286.723 kb on + strand at 286.724 kb on - strand at 286.979 kb on + strand, within GFF556 at 286.980 kb on - strand, within GFF556 at 287.075 kb on + strand, within GFF556 at 287.075 kb on + strand, within GFF556 at 287.076 kb on - strand, within GFF556 at 287.123 kb on + strand, within GFF556 at 287.151 kb on + strand, within GFF556 at 287.188 kb on - strand, within GFF556 at 287.265 kb on + strand, within GFF556 at 287.290 kb on + strand, within GFF556 at 287.291 kb on - strand, within GFF556 at 287.411 kb on - strand, within GFF556 at 287.651 kb on - strand at 287.869 kb on - strand, within GFF557 at 287.949 kb on + strand, within GFF557 at 287.949 kb on + strand, within GFF557 at 287.950 kb on - strand, within GFF557 at 288.097 kb on + strand, within GFF557 at 288.098 kb on - strand, within GFF557 at 288.293 kb on - strand, within GFF557 at 288.307 kb on + strand, within GFF557 at 288.307 kb on + strand, within GFF557 at 288.452 kb on + strand at 288.462 kb on - strand at 288.528 kb on + strand at 288.537 kb on + strand at 288.608 kb on - strand at 288.754 kb on - strand, within GFF558 at 288.764 kb on + strand, within GFF558 at 288.764 kb on + strand, within GFF558 at 288.764 kb on + strand, within GFF558 at 288.765 kb on - strand, within GFF558 at 288.789 kb on + strand, within GFF558 at 288.827 kb on - strand, within GFF558 at 288.827 kb on - strand, within GFF558 at 289.041 kb on + strand, within GFF558 at 289.079 kb on + strand, within GFF558 at 289.084 kb on + strand, within GFF558 at 289.085 kb on - strand, within GFF558 at 289.099 kb on - strand, within GFF558 at 289.138 kb on + strand, within GFF558 at 289.139 kb on - strand, within GFF558 at 289.139 kb on - strand, within GFF558 at 289.176 kb on + strand, within GFF558 at 289.179 kb on - strand, within GFF558 at 289.334 kb on - strand, within GFF558 at 289.334 kb on - strand, within GFF558 at 289.363 kb on + strand, within GFF558 at 289.364 kb on - strand, within GFF558 at 289.364 kb on - strand, within GFF558 at 289.407 kb on + strand, within GFF558 at 289.408 kb on - strand, within GFF558 at 289.411 kb on + strand, within GFF558 at 289.412 kb on - strand, within GFF558 at 289.412 kb on - strand, within GFF558
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 286,721 + -0.6 286,721 + +0.3 286,722 - +0.4 286,722 - -0.4 286,723 + -0.0 286,723 + +0.2 286,724 - +1.0 286,979 + GFF556 0.22 -0.1 286,980 - GFF556 0.22 -0.1 287,075 + GFF556 0.33 -1.4 287,075 + GFF556 0.33 -0.1 287,076 - GFF556 0.33 +0.5 287,123 + GFF556 0.39 +0.5 287,151 + GFF556 0.42 -0.0 287,188 - GFF556 0.46 -0.2 287,265 + GFF556 0.55 -1.1 287,290 + GFF556 0.57 -0.0 287,291 - GFF556 0.57 +0.1 287,411 - GFF556 0.71 -0.1 287,651 - +0.3 287,869 - GFF557 0.24 +0.2 287,949 + GFF557 0.34 +0.7 287,949 + GFF557 0.34 +0.3 287,950 - GFF557 0.34 +0.5 288,097 + GFF557 0.51 -1.1 288,098 - GFF557 0.51 +0.1 288,293 - GFF557 0.74 +0.2 288,307 + GFF557 0.76 +0.9 288,307 + GFF557 0.76 -0.5 288,452 + +0.0 288,462 - -0.2 288,528 + +1.5 288,537 + +0.2 288,608 - +0.5 288,754 - GFF558 0.23 -0.4 288,764 + GFF558 0.24 -0.5 288,764 + GFF558 0.24 -0.7 288,764 + GFF558 0.24 +0.1 288,765 - GFF558 0.24 -0.4 288,789 + GFF558 0.26 +0.2 288,827 - GFF558 0.29 +0.2 288,827 - GFF558 0.29 +0.7 289,041 + GFF558 0.49 -0.3 289,079 + GFF558 0.53 +0.8 289,084 + GFF558 0.53 +3.1 289,085 - GFF558 0.54 -0.6 289,099 - GFF558 0.55 +0.3 289,138 + GFF558 0.58 +0.4 289,139 - GFF558 0.59 +0.1 289,139 - GFF558 0.59 +0.3 289,176 + GFF558 0.62 +0.0 289,179 - GFF558 0.62 +0.1 289,334 - GFF558 0.77 +1.0 289,334 - GFF558 0.77 -0.2 289,363 + GFF558 0.79 +1.4 289,364 - GFF558 0.80 -0.1 289,364 - GFF558 0.80 +0.0 289,407 + GFF558 0.84 -0.7 289,408 - GFF558 0.84 +0.2 289,411 + GFF558 0.84 -0.1 289,412 - GFF558 0.84 +0.8 289,412 - GFF558 0.84 -0.2
Or see this region's nucleotide sequence