Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF548 and GFF549 are separated by 59 nucleotides GFF549 and GFF550 overlap by 4 nucleotides
GFF548 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 279,639 to 280,685
GFF548
GFF549 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 280,745 to 281,671
GFF549
GFF550 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 281,668 to 282,945
GFF550
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 279.863 kb on + strand, within GFF548 at 279.910 kb on - strand, within GFF548 at 279.981 kb on + strand, within GFF548 at 279.981 kb on + strand, within GFF548 at 280.035 kb on + strand, within GFF548 at 280.035 kb on + strand, within GFF548 at 280.070 kb on + strand, within GFF548 at 280.149 kb on - strand, within GFF548 at 280.166 kb on + strand, within GFF548 at 280.248 kb on + strand, within GFF548 at 280.249 kb on - strand, within GFF548 at 280.311 kb on - strand, within GFF548 at 280.332 kb on - strand, within GFF548 at 280.470 kb on + strand, within GFF548 at 280.486 kb on - strand, within GFF548 at 280.622 kb on + strand at 280.622 kb on + strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.740 kb on - strand at 280.744 kb on + strand at 280.745 kb on - strand at 280.822 kb on + strand at 280.831 kb on + strand at 280.831 kb on + strand at 280.831 kb on + strand at 280.832 kb on - strand at 280.842 kb on - strand, within GFF549 at 280.842 kb on - strand, within GFF549 at 280.883 kb on + strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.886 kb on - strand, within GFF549 at 280.898 kb on + strand, within GFF549 at 280.899 kb on - strand, within GFF549 at 280.910 kb on - strand, within GFF549 at 280.942 kb on - strand, within GFF549 at 280.988 kb on - strand, within GFF549 at 280.988 kb on - strand, within GFF549 at 281.229 kb on + strand, within GFF549 at 281.341 kb on + strand, within GFF549 at 281.342 kb on - strand, within GFF549 at 281.452 kb on + strand, within GFF549 at 281.565 kb on - strand, within GFF549 at 281.568 kb on + strand, within GFF549 at 281.573 kb on - strand, within GFF549 at 281.581 kb on + strand at 281.582 kb on - strand at 281.582 kb on - strand at 281.582 kb on - strand at 281.744 kb on + strand at 281.745 kb on - strand at 282.029 kb on - strand, within GFF550 at 282.118 kb on + strand, within GFF550 at 282.118 kb on + strand, within GFF550 at 282.120 kb on + strand, within GFF550 at 282.146 kb on - strand, within GFF550 at 282.146 kb on - strand, within GFF550 at 282.286 kb on - strand, within GFF550 at 282.579 kb on - strand, within GFF550 at 282.616 kb on - strand, within GFF550
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 279,863 + GFF548 0.21 -0.2 279,910 - GFF548 0.26 -1.3 279,981 + GFF548 0.33 +0.4 279,981 + GFF548 0.33 +0.9 280,035 + GFF548 0.38 +0.2 280,035 + GFF548 0.38 +0.0 280,070 + GFF548 0.41 -0.9 280,149 - GFF548 0.49 +0.3 280,166 + GFF548 0.50 +0.7 280,248 + GFF548 0.58 -0.3 280,249 - GFF548 0.58 -0.3 280,311 - GFF548 0.64 -0.6 280,332 - GFF548 0.66 -0.3 280,470 + GFF548 0.79 +0.1 280,486 - GFF548 0.81 -0.9 280,622 + -0.1 280,622 + +0.8 280,697 - +0.1 280,697 - -0.1 280,740 - -0.1 280,744 + -0.1 280,745 - +0.2 280,822 + +0.3 280,831 + +0.3 280,831 + +0.0 280,831 + +0.8 280,832 - +0.3 280,842 - GFF549 0.10 +0.2 280,842 - GFF549 0.10 +0.4 280,883 + GFF549 0.15 +0.4 280,884 - GFF549 0.15 +0.7 280,884 - GFF549 0.15 +0.3 280,884 - GFF549 0.15 -0.9 280,884 - GFF549 0.15 -0.4 280,884 - GFF549 0.15 +0.1 280,885 + GFF549 0.15 +0.2 280,885 + GFF549 0.15 +0.3 280,885 + GFF549 0.15 -0.0 280,885 + GFF549 0.15 +0.7 280,886 - GFF549 0.15 -0.0 280,898 + GFF549 0.17 +0.5 280,899 - GFF549 0.17 -0.0 280,910 - GFF549 0.18 -0.3 280,942 - GFF549 0.21 +0.2 280,988 - GFF549 0.26 -0.3 280,988 - GFF549 0.26 +0.3 281,229 + GFF549 0.52 +0.0 281,341 + GFF549 0.64 +0.9 281,342 - GFF549 0.64 +0.1 281,452 + GFF549 0.76 +0.1 281,565 - GFF549 0.88 +0.7 281,568 + GFF549 0.89 -0.0 281,573 - GFF549 0.89 -0.2 281,581 + +0.1 281,582 - -0.3 281,582 - +0.1 281,582 - -2.3 281,744 + +0.3 281,745 - -0.2 282,029 - GFF550 0.28 +0.2 282,118 + GFF550 0.35 -0.2 282,118 + GFF550 0.35 +0.2 282,120 + GFF550 0.35 +0.1 282,146 - GFF550 0.37 +0.5 282,146 - GFF550 0.37 -0.7 282,286 - GFF550 0.48 +0.3 282,579 - GFF550 0.71 -0.3 282,616 - GFF550 0.74 -0.0
Or see this region's nucleotide sequence