Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF536

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF535 and GFF536 are separated by 199 nucleotidesGFF536 and GFF537 are separated by 80 nucleotidesGFF537 and GFF538 are separated by 141 nucleotides GFF535 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 266,593 to 268,236 GFF535 GFF536 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 268,436 to 270,634 GFF536 GFF537 - probable enzyme yhhN, at 270,715 to 271,341 GFF537 GFF538 - Putative receptor, at 271,483 to 271,854 GFF538 Position (kb) 268 269 270 271Strain fitness (log2 ratio) -2 -1 0 1 2at 267.518 kb on - strand, within GFF535at 267.586 kb on + strand, within GFF535at 267.631 kb on + strand, within GFF535at 267.637 kb on - strand, within GFF535at 267.641 kb on - strand, within GFF535at 267.701 kb on - strand, within GFF535at 267.740 kb on + strand, within GFF535at 267.741 kb on - strand, within GFF535at 267.742 kb on + strand, within GFF535at 267.742 kb on + strand, within GFF535at 267.743 kb on - strand, within GFF535at 267.743 kb on - strand, within GFF535at 267.798 kb on - strand, within GFF535at 267.802 kb on - strand, within GFF535at 267.843 kb on - strand, within GFF535at 267.917 kb on + strand, within GFF535at 268.189 kb on + strandat 268.458 kb on - strandat 268.532 kb on + strandat 268.702 kb on + strand, within GFF536at 269.423 kb on - strand, within GFF536at 269.491 kb on - strand, within GFF536at 269.561 kb on - strand, within GFF536at 269.572 kb on + strand, within GFF536at 269.572 kb on + strand, within GFF536at 269.574 kb on + strand, within GFF536at 269.575 kb on - strand, within GFF536at 269.575 kb on - strand, within GFF536at 269.575 kb on - strand, within GFF536at 269.761 kb on + strand, within GFF536at 269.815 kb on + strand, within GFF536at 269.858 kb on - strand, within GFF536at 269.878 kb on + strand, within GFF536at 269.878 kb on + strand, within GFF536at 269.933 kb on - strand, within GFF536at 270.018 kb on - strand, within GFF536at 270.046 kb on + strand, within GFF536at 270.141 kb on + strand, within GFF536at 270.167 kb on - strand, within GFF536at 270.193 kb on + strand, within GFF536at 270.194 kb on - strand, within GFF536at 270.226 kb on + strand, within GFF536at 270.238 kb on + strand, within GFF536at 270.239 kb on - strand, within GFF536at 270.239 kb on - strand, within GFF536at 270.242 kb on - strand, within GFF536at 270.242 kb on - strand, within GFF536at 270.485 kb on - strandat 270.487 kb on - strandat 270.554 kb on - strandat 270.566 kb on + strandat 270.634 kb on + strandat 270.635 kb on - strandat 270.635 kb on - strandat 270.635 kb on - strandat 270.712 kb on + strandat 270.716 kb on + strandat 270.722 kb on + strandat 270.826 kb on - strand, within GFF537at 270.942 kb on + strand, within GFF537at 270.943 kb on - strand, within GFF537at 270.947 kb on - strand, within GFF537at 270.958 kb on + strand, within GFF537at 270.959 kb on - strand, within GFF537at 271.074 kb on - strand, within GFF537at 271.109 kb on + strand, within GFF537at 271.110 kb on - strand, within GFF537at 271.234 kb on + strand, within GFF537at 271.235 kb on - strand, within GFF537at 271.235 kb on - strand, within GFF537at 271.252 kb on - strand, within GFF537at 271.284 kb on - strandat 271.298 kb on + strandat 271.298 kb on + strandat 271.298 kb on + strandat 271.378 kb on + strandat 271.404 kb on + strandat 271.434 kb on - strandat 271.434 kb on - strandat 271.434 kb on - strandat 271.435 kb on + strandat 271.436 kb on - strandat 271.595 kb on + strand, within GFF538

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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267,518 - GFF535 0.56 +0.2
267,586 + GFF535 0.60 +0.1
267,631 + GFF535 0.63 +0.0
267,637 - GFF535 0.64 +0.2
267,641 - GFF535 0.64 +0.1
267,701 - GFF535 0.67 -0.3
267,740 + GFF535 0.70 -0.4
267,741 - GFF535 0.70 -0.1
267,742 + GFF535 0.70 -0.7
267,742 + GFF535 0.70 +0.2
267,743 - GFF535 0.70 -0.0
267,743 - GFF535 0.70 +0.1
267,798 - GFF535 0.73 -0.2
267,802 - GFF535 0.74 +0.3
267,843 - GFF535 0.76 +0.2
267,917 + GFF535 0.81 +0.4
268,189 + -1.1
268,458 - -0.7
268,532 + -1.0
268,702 + GFF536 0.12 -1.5
269,423 - GFF536 0.45 -0.5
269,491 - GFF536 0.48 -1.3
269,561 - GFF536 0.51 -0.8
269,572 + GFF536 0.52 -1.4
269,572 + GFF536 0.52 -2.2
269,574 + GFF536 0.52 -1.2
269,575 - GFF536 0.52 -1.0
269,575 - GFF536 0.52 -0.7
269,575 - GFF536 0.52 -0.7
269,761 + GFF536 0.60 -0.6
269,815 + GFF536 0.63 -0.7
269,858 - GFF536 0.65 -0.9
269,878 + GFF536 0.66 -0.3
269,878 + GFF536 0.66 -0.9
269,933 - GFF536 0.68 -1.1
270,018 - GFF536 0.72 -0.7
270,046 + GFF536 0.73 -2.1
270,141 + GFF536 0.78 -0.8
270,167 - GFF536 0.79 +0.7
270,193 + GFF536 0.80 -0.3
270,194 - GFF536 0.80 -1.0
270,226 + GFF536 0.81 -2.7
270,238 + GFF536 0.82 -0.7
270,239 - GFF536 0.82 +0.3
270,239 - GFF536 0.82 -0.5
270,242 - GFF536 0.82 -1.3
270,242 - GFF536 0.82 -0.7
270,485 - -1.0
270,487 - -0.6
270,554 - -1.3
270,566 + -0.7
270,634 + -2.1
270,635 - -0.9
270,635 - -0.3
270,635 - -1.3
270,712 + -0.2
270,716 + +0.9
270,722 + +0.7
270,826 - GFF537 0.18 +1.8
270,942 + GFF537 0.36 +0.6
270,943 - GFF537 0.36 -0.8
270,947 - GFF537 0.37 +0.3
270,958 + GFF537 0.39 -0.3
270,959 - GFF537 0.39 +0.4
271,074 - GFF537 0.57 +0.4
271,109 + GFF537 0.63 +0.1
271,110 - GFF537 0.63 -1.2
271,234 + GFF537 0.83 +0.5
271,235 - GFF537 0.83 -0.3
271,235 - GFF537 0.83 -0.2
271,252 - GFF537 0.86 -0.4
271,284 - -0.1
271,298 + +0.3
271,298 + -0.1
271,298 + +0.3
271,378 + -0.9
271,404 + +0.4
271,434 - +0.4
271,434 - -0.2
271,434 - +0.2
271,435 + +0.1
271,436 - -0.4
271,595 + GFF538 0.30 +0.3

Or see this region's nucleotide sequence