Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF530 and GFF531 are separated by 131 nucleotides GFF531 and GFF532 are separated by 3 nucleotides GFF532 and GFF533 are separated by 72 nucleotides
GFF530 - Putative PerM family permease, at 262,457 to 263,506
GFF530
GFF531 - Transporter, putative, at 263,638 to 264,855
GFF531
GFF532 - DcrB protein precursor, at 264,859 to 265,416
GFF532
GFF533 - Putative preQ0 transporter, at 265,489 to 266,229
GFF533
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 262.746 kb on - strand, within GFF530 at 262.795 kb on + strand, within GFF530 at 262.795 kb on + strand, within GFF530 at 262.804 kb on - strand, within GFF530 at 262.804 kb on - strand, within GFF530 at 262.823 kb on + strand, within GFF530 at 262.877 kb on - strand, within GFF530 at 262.892 kb on + strand, within GFF530 at 262.921 kb on - strand, within GFF530 at 262.996 kb on + strand, within GFF530 at 263.087 kb on + strand, within GFF530 at 263.088 kb on - strand, within GFF530 at 263.138 kb on - strand, within GFF530 at 263.152 kb on + strand, within GFF530 at 263.152 kb on + strand, within GFF530 at 263.156 kb on + strand, within GFF530 at 263.230 kb on + strand, within GFF530 at 263.237 kb on - strand, within GFF530 at 263.279 kb on - strand, within GFF530 at 263.312 kb on - strand, within GFF530 at 263.408 kb on - strand at 263.441 kb on - strand at 263.600 kb on + strand at 263.620 kb on - strand at 263.634 kb on - strand at 263.692 kb on - strand at 263.692 kb on - strand at 263.712 kb on + strand at 263.712 kb on + strand at 263.725 kb on + strand at 263.808 kb on + strand, within GFF531 at 263.809 kb on - strand, within GFF531 at 263.824 kb on + strand, within GFF531 at 263.825 kb on - strand, within GFF531 at 263.840 kb on + strand, within GFF531 at 263.864 kb on - strand, within GFF531 at 263.874 kb on - strand, within GFF531 at 263.874 kb on - strand, within GFF531 at 264.157 kb on + strand, within GFF531 at 264.225 kb on - strand, within GFF531 at 264.304 kb on + strand, within GFF531 at 264.358 kb on - strand, within GFF531 at 264.360 kb on + strand, within GFF531 at 264.378 kb on + strand, within GFF531 at 264.670 kb on + strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.864 kb on + strand at 264.865 kb on - strand at 264.876 kb on + strand at 264.877 kb on - strand at 265.035 kb on + strand, within GFF532 at 265.053 kb on + strand, within GFF532 at 265.054 kb on - strand, within GFF532 at 265.059 kb on + strand, within GFF532 at 265.060 kb on - strand, within GFF532 at 265.060 kb on - strand, within GFF532 at 265.093 kb on - strand, within GFF532 at 265.206 kb on + strand, within GFF532 at 265.344 kb on + strand, within GFF532 at 265.397 kb on + strand at 265.397 kb on + strand at 265.522 kb on - strand at 265.607 kb on + strand, within GFF533 at 265.644 kb on + strand, within GFF533 at 265.807 kb on - strand, within GFF533
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 262,746 - GFF530 0.28 +0.0 262,795 + GFF530 0.32 -0.1 262,795 + GFF530 0.32 +0.5 262,804 - GFF530 0.33 -0.4 262,804 - GFF530 0.33 +0.3 262,823 + GFF530 0.35 -0.2 262,877 - GFF530 0.40 +0.1 262,892 + GFF530 0.41 +0.0 262,921 - GFF530 0.44 +0.2 262,996 + GFF530 0.51 +0.0 263,087 + GFF530 0.60 +0.0 263,088 - GFF530 0.60 +0.1 263,138 - GFF530 0.65 +0.0 263,152 + GFF530 0.66 +0.4 263,152 + GFF530 0.66 +0.2 263,156 + GFF530 0.67 -1.0 263,230 + GFF530 0.74 -0.4 263,237 - GFF530 0.74 +0.1 263,279 - GFF530 0.78 -0.0 263,312 - GFF530 0.81 -0.3 263,408 - +0.4 263,441 - +0.5 263,600 + -1.0 263,620 - -0.1 263,634 - -0.1 263,692 - -1.5 263,692 - +1.0 263,712 + +0.7 263,712 + +0.1 263,725 + +0.7 263,808 + GFF531 0.14 +0.3 263,809 - GFF531 0.14 -0.1 263,824 + GFF531 0.15 -0.0 263,825 - GFF531 0.15 -0.4 263,840 + GFF531 0.17 -0.3 263,864 - GFF531 0.19 -0.6 263,874 - GFF531 0.19 +0.3 263,874 - GFF531 0.19 +0.1 264,157 + GFF531 0.43 +0.5 264,225 - GFF531 0.48 +0.2 264,304 + GFF531 0.55 +0.0 264,358 - GFF531 0.59 -0.8 264,360 + GFF531 0.59 +0.2 264,378 + GFF531 0.61 -0.1 264,670 + GFF531 0.85 +0.3 264,671 - GFF531 0.85 +1.4 264,671 - GFF531 0.85 -0.2 264,671 - GFF531 0.85 +1.5 264,671 - GFF531 0.85 +1.3 264,864 + -0.4 264,865 - -0.2 264,876 + +0.1 264,877 - -0.0 265,035 + GFF532 0.32 -0.2 265,053 + GFF532 0.35 -0.1 265,054 - GFF532 0.35 +0.6 265,059 + GFF532 0.36 +0.1 265,060 - GFF532 0.36 +0.6 265,060 - GFF532 0.36 -0.5 265,093 - GFF532 0.42 -1.9 265,206 + GFF532 0.62 +0.3 265,344 + GFF532 0.87 -0.7 265,397 + -1.0 265,397 + +0.2 265,522 - +0.6 265,607 + GFF533 0.16 +0.0 265,644 + GFF533 0.21 -0.1 265,807 - GFF533 0.43 +0.4
Or see this region's nucleotide sequence