Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF502 and GFF503 are separated by 72 nucleotides GFF503 and GFF504 are separated by 627 nucleotides
GFF502 - Inner membrane protein YhjD, at 230,377 to 231,405
GFF502
GFF503 - LysR family transcriptional regulator YhjC, at 231,478 to 232,380
GFF503
GFF504 - Putative regulator, at 233,008 to 233,610
GFF504
Position (kb) 231
232
233 Strain fitness (log2 ratio) -1
0
1 at 230.547 kb on - strand, within GFF502 at 230.812 kb on + strand, within GFF502 at 230.847 kb on - strand, within GFF502 at 230.988 kb on + strand, within GFF502 at 231.009 kb on + strand, within GFF502 at 231.039 kb on + strand, within GFF502 at 231.061 kb on + strand, within GFF502 at 231.061 kb on + strand, within GFF502 at 231.168 kb on - strand, within GFF502 at 231.436 kb on + strand at 231.436 kb on + strand at 231.436 kb on + strand at 231.437 kb on - strand at 231.444 kb on + strand at 231.446 kb on + strand at 231.446 kb on + strand at 231.514 kb on + strand at 231.520 kb on - strand at 231.670 kb on + strand, within GFF503 at 231.804 kb on - strand, within GFF503 at 231.866 kb on + strand, within GFF503 at 232.000 kb on - strand, within GFF503 at 232.000 kb on - strand, within GFF503 at 232.000 kb on - strand, within GFF503 at 232.086 kb on + strand, within GFF503 at 232.087 kb on - strand, within GFF503 at 232.087 kb on - strand, within GFF503 at 232.091 kb on - strand, within GFF503 at 232.203 kb on + strand, within GFF503 at 232.450 kb on + strand at 232.620 kb on + strand at 232.620 kb on + strand at 232.621 kb on - strand at 232.621 kb on - strand at 232.625 kb on - strand at 232.632 kb on - strand at 232.766 kb on - strand at 233.238 kb on + strand, within GFF504 at 233.241 kb on + strand, within GFF504
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 230,547 - GFF502 0.17 -0.8 230,812 + GFF502 0.42 +0.2 230,847 - GFF502 0.46 -0.1 230,988 + GFF502 0.59 -1.1 231,009 + GFF502 0.61 +0.6 231,039 + GFF502 0.64 -0.2 231,061 + GFF502 0.66 +0.0 231,061 + GFF502 0.66 -0.0 231,168 - GFF502 0.77 -0.5 231,436 + +0.2 231,436 + -0.9 231,436 + +0.0 231,437 - -0.1 231,444 + -0.2 231,446 + -0.4 231,446 + -0.1 231,514 + -0.3 231,520 - +0.0 231,670 + GFF503 0.21 -0.4 231,804 - GFF503 0.36 +0.7 231,866 + GFF503 0.43 -0.2 232,000 - GFF503 0.58 +0.1 232,000 - GFF503 0.58 +0.2 232,000 - GFF503 0.58 -0.2 232,086 + GFF503 0.67 +0.6 232,087 - GFF503 0.67 -0.3 232,087 - GFF503 0.67 +0.8 232,091 - GFF503 0.68 -0.1 232,203 + GFF503 0.80 +0.3 232,450 + -0.1 232,620 + +0.1 232,620 + -0.6 232,621 - +0.5 232,621 - +0.1 232,625 - +0.5 232,632 - -0.3 232,766 - +0.6 233,238 + GFF504 0.38 +0.5 233,241 + GFF504 0.39 +0.8
Or see this region's nucleotide sequence