Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF492

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF491 and GFF492 are separated by 3 nucleotidesGFF492 and GFF493 are separated by 71 nucleotides GFF491 - Cyclic di-GMP binding protein precursor, at 212,247 to 214,547 GFF491 GFF492 - Endoglucanase precursor (EC 3.2.1.4), at 214,551 to 215,660 GFF492 GFF493 - Cellulose synthase operon protein C, at 215,732 to 219,184 GFF493 Position (kb) 214 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 213.652 kb on + strand, within GFF491at 213.653 kb on - strand, within GFF491at 213.653 kb on - strand, within GFF491at 213.653 kb on - strand, within GFF491at 213.669 kb on + strand, within GFF491at 213.671 kb on + strand, within GFF491at 213.672 kb on - strand, within GFF491at 213.707 kb on + strand, within GFF491at 213.707 kb on + strand, within GFF491at 213.708 kb on - strand, within GFF491at 213.708 kb on - strand, within GFF491at 213.711 kb on - strand, within GFF491at 213.775 kb on - strand, within GFF491at 214.127 kb on + strand, within GFF491at 214.277 kb on - strand, within GFF491at 214.380 kb on + strandat 214.380 kb on + strandat 214.380 kb on + strandat 214.380 kb on + strandat 214.384 kb on - strandat 214.477 kb on + strandat 214.477 kb on + strandat 214.508 kb on + strandat 214.559 kb on + strandat 214.603 kb on + strandat 214.622 kb on + strandat 214.623 kb on - strandat 214.706 kb on + strand, within GFF492at 214.729 kb on - strand, within GFF492at 214.828 kb on - strand, within GFF492at 215.076 kb on - strand, within GFF492at 215.097 kb on + strand, within GFF492at 215.098 kb on - strand, within GFF492at 215.224 kb on - strand, within GFF492at 215.278 kb on - strand, within GFF492at 215.295 kb on + strand, within GFF492at 215.345 kb on - strand, within GFF492at 215.547 kb on + strand, within GFF492at 215.547 kb on + strand, within GFF492at 215.554 kb on - strandat 215.554 kb on - strandat 215.620 kb on + strandat 215.620 kb on + strandat 215.753 kb on - strandat 215.761 kb on - strandat 215.848 kb on - strandat 215.848 kb on - strandat 215.921 kb on + strandat 215.961 kb on + strandat 216.431 kb on + strand, within GFF493at 216.485 kb on - strand, within GFF493

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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213,652 + GFF491 0.61 -0.4
213,653 - GFF491 0.61 +0.3
213,653 - GFF491 0.61 -0.0
213,653 - GFF491 0.61 -0.0
213,669 + GFF491 0.62 +0.9
213,671 + GFF491 0.62 +0.9
213,672 - GFF491 0.62 +0.4
213,707 + GFF491 0.63 +0.6
213,707 + GFF491 0.63 -0.1
213,708 - GFF491 0.63 +0.2
213,708 - GFF491 0.63 -1.1
213,711 - GFF491 0.64 -0.1
213,775 - GFF491 0.66 -1.2
214,127 + GFF491 0.82 +3.8
214,277 - GFF491 0.88 -1.4
214,380 + +0.2
214,380 + -0.2
214,380 + -0.5
214,380 + -0.2
214,384 - +0.2
214,477 + +0.4
214,477 + +0.5
214,508 + +0.2
214,559 + +1.0
214,603 + -1.5
214,622 + -0.6
214,623 - -2.6
214,706 + GFF492 0.14 -1.2
214,729 - GFF492 0.16 -1.8
214,828 - GFF492 0.25 -1.9
215,076 - GFF492 0.47 -1.9
215,097 + GFF492 0.49 +0.6
215,098 - GFF492 0.49 -2.2
215,224 - GFF492 0.61 +0.3
215,278 - GFF492 0.65 -2.3
215,295 + GFF492 0.67 -0.1
215,345 - GFF492 0.72 -3.3
215,547 + GFF492 0.90 -0.1
215,547 + GFF492 0.90 +0.6
215,554 - -2.3
215,554 - -0.4
215,620 + +0.0
215,620 + -2.1
215,753 - -0.8
215,761 - -0.3
215,848 - +0.3
215,848 - -0.3
215,921 + +0.3
215,961 + +0.3
216,431 + GFF493 0.20 +0.3
216,485 - GFF493 0.22 +0.3

Or see this region's nucleotide sequence