Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF491 and GFF492 are separated by 3 nucleotides GFF492 and GFF493 are separated by 71 nucleotides
GFF491 - Cyclic di-GMP binding protein precursor, at 212,247 to 214,547
GFF491
GFF492 - Endoglucanase precursor (EC 3.2.1.4), at 214,551 to 215,660
GFF492
GFF493 - Cellulose synthase operon protein C, at 215,732 to 219,184
GFF493
Position (kb) 214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 213.652 kb on + strand, within GFF491 at 213.653 kb on - strand, within GFF491 at 213.653 kb on - strand, within GFF491 at 213.653 kb on - strand, within GFF491 at 213.669 kb on + strand, within GFF491 at 213.671 kb on + strand, within GFF491 at 213.672 kb on - strand, within GFF491 at 213.707 kb on + strand, within GFF491 at 213.707 kb on + strand, within GFF491 at 213.708 kb on - strand, within GFF491 at 213.708 kb on - strand, within GFF491 at 213.711 kb on - strand, within GFF491 at 213.775 kb on - strand, within GFF491 at 214.127 kb on + strand, within GFF491 at 214.277 kb on - strand, within GFF491 at 214.380 kb on + strand at 214.380 kb on + strand at 214.380 kb on + strand at 214.380 kb on + strand at 214.384 kb on - strand at 214.477 kb on + strand at 214.477 kb on + strand at 214.508 kb on + strand at 214.559 kb on + strand at 214.603 kb on + strand at 214.622 kb on + strand at 214.623 kb on - strand at 214.706 kb on + strand, within GFF492 at 214.729 kb on - strand, within GFF492 at 214.828 kb on - strand, within GFF492 at 215.076 kb on - strand, within GFF492 at 215.097 kb on + strand, within GFF492 at 215.098 kb on - strand, within GFF492 at 215.224 kb on - strand, within GFF492 at 215.278 kb on - strand, within GFF492 at 215.295 kb on + strand, within GFF492 at 215.345 kb on - strand, within GFF492 at 215.547 kb on + strand, within GFF492 at 215.547 kb on + strand, within GFF492 at 215.554 kb on - strand at 215.554 kb on - strand at 215.620 kb on + strand at 215.620 kb on + strand at 215.753 kb on - strand at 215.761 kb on - strand at 215.848 kb on - strand at 215.848 kb on - strand at 215.921 kb on + strand at 215.961 kb on + strand at 216.431 kb on + strand, within GFF493 at 216.485 kb on - strand, within GFF493
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 213,652 + GFF491 0.61 -0.4 213,653 - GFF491 0.61 +0.3 213,653 - GFF491 0.61 -0.0 213,653 - GFF491 0.61 -0.0 213,669 + GFF491 0.62 +0.9 213,671 + GFF491 0.62 +0.9 213,672 - GFF491 0.62 +0.4 213,707 + GFF491 0.63 +0.6 213,707 + GFF491 0.63 -0.1 213,708 - GFF491 0.63 +0.2 213,708 - GFF491 0.63 -1.1 213,711 - GFF491 0.64 -0.1 213,775 - GFF491 0.66 -1.2 214,127 + GFF491 0.82 +3.8 214,277 - GFF491 0.88 -1.4 214,380 + +0.2 214,380 + -0.2 214,380 + -0.5 214,380 + -0.2 214,384 - +0.2 214,477 + +0.4 214,477 + +0.5 214,508 + +0.2 214,559 + +1.0 214,603 + -1.5 214,622 + -0.6 214,623 - -2.6 214,706 + GFF492 0.14 -1.2 214,729 - GFF492 0.16 -1.8 214,828 - GFF492 0.25 -1.9 215,076 - GFF492 0.47 -1.9 215,097 + GFF492 0.49 +0.6 215,098 - GFF492 0.49 -2.2 215,224 - GFF492 0.61 +0.3 215,278 - GFF492 0.65 -2.3 215,295 + GFF492 0.67 -0.1 215,345 - GFF492 0.72 -3.3 215,547 + GFF492 0.90 -0.1 215,547 + GFF492 0.90 +0.6 215,554 - -2.3 215,554 - -0.4 215,620 + +0.0 215,620 + -2.1 215,753 - -0.8 215,761 - -0.3 215,848 - +0.3 215,848 - -0.3 215,921 + +0.3 215,961 + +0.3 216,431 + GFF493 0.20 +0.3 216,485 - GFF493 0.22 +0.3
Or see this region's nucleotide sequence