Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF492
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
213,652 | + | GFF491 | 0.61 | -0.4 | |
213,653 | - | GFF491 | 0.61 | +0.3 | |
213,653 | - | GFF491 | 0.61 | -0.0 | |
213,653 | - | GFF491 | 0.61 | -0.0 | |
213,669 | + | GFF491 | 0.62 | +0.9 | |
213,671 | + | GFF491 | 0.62 | +0.9 | |
213,672 | - | GFF491 | 0.62 | +0.4 | |
213,707 | + | GFF491 | 0.63 | +0.6 | |
213,707 | + | GFF491 | 0.63 | -0.1 | |
213,708 | - | GFF491 | 0.63 | +0.2 | |
213,708 | - | GFF491 | 0.63 | -1.1 | |
213,711 | - | GFF491 | 0.64 | -0.1 | |
213,775 | - | GFF491 | 0.66 | -1.2 | |
214,127 | + | GFF491 | 0.82 | +3.8 | |
214,277 | - | GFF491 | 0.88 | -1.4 | |
214,380 | + | +0.2 | |||
214,380 | + | -0.2 | |||
214,380 | + | -0.5 | |||
214,380 | + | -0.2 | |||
214,384 | - | +0.2 | |||
214,477 | + | +0.4 | |||
214,477 | + | +0.5 | |||
214,508 | + | +0.2 | |||
214,559 | + | +1.0 | |||
214,603 | + | -1.5 | |||
214,622 | + | -0.6 | |||
214,623 | - | -2.6 | |||
214,706 | + | GFF492 | 0.14 | -1.2 | |
214,729 | - | GFF492 | 0.16 | -1.8 | |
214,828 | - | GFF492 | 0.25 | -1.9 | |
215,076 | - | GFF492 | 0.47 | -1.9 | |
215,097 | + | GFF492 | 0.49 | +0.6 | |
215,098 | - | GFF492 | 0.49 | -2.2 | |
215,224 | - | GFF492 | 0.61 | +0.3 | |
215,278 | - | GFF492 | 0.65 | -2.3 | |
215,295 | + | GFF492 | 0.67 | -0.1 | |
215,345 | - | GFF492 | 0.72 | -3.3 | |
215,547 | + | GFF492 | 0.90 | -0.1 | |
215,547 | + | GFF492 | 0.90 | +0.6 | |
215,554 | - | -2.3 | |||
215,554 | - | -0.4 | |||
215,620 | + | +0.0 | |||
215,620 | + | -2.1 | |||
215,753 | - | -0.8 | |||
215,761 | - | -0.3 | |||
215,848 | - | +0.3 | |||
215,848 | - | -0.3 | |||
215,921 | + | +0.3 | |||
215,961 | + | +0.3 | |||
216,431 | + | GFF493 | 0.20 | +0.3 | |
216,485 | - | GFF493 | 0.22 | +0.3 |
Or see this region's nucleotide sequence