Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4909 and GFF4910 are separated by 8 nucleotides GFF4910 and GFF4911 are separated by 157 nucleotides
GFF4909 - Hydroxylamine reductase (EC 1.7.-.-), at 10,461 to 12,113
GFF4909
GFF4910 - NADH oxidoreductase hcr (EC 1.-.-.-), at 12,122 to 13,093
GFF4910
GFF4911 - Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2), at 13,251 to 14,969
GFF4911
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1 at 11.136 kb on + strand, within GFF4909 at 11.223 kb on + strand, within GFF4909 at 11.337 kb on + strand, within GFF4909 at 11.447 kb on + strand, within GFF4909 at 11.448 kb on - strand, within GFF4909 at 11.662 kb on + strand, within GFF4909 at 11.696 kb on + strand, within GFF4909 at 11.700 kb on + strand, within GFF4909 at 11.701 kb on - strand, within GFF4909 at 11.762 kb on + strand, within GFF4909 at 11.834 kb on + strand, within GFF4909 at 11.844 kb on + strand, within GFF4909 at 11.845 kb on - strand, within GFF4909 at 12.224 kb on + strand, within GFF4910 at 12.225 kb on - strand, within GFF4910 at 12.328 kb on + strand, within GFF4910 at 12.328 kb on + strand, within GFF4910 at 12.329 kb on - strand, within GFF4910 at 12.329 kb on - strand, within GFF4910 at 12.329 kb on - strand, within GFF4910 at 12.329 kb on - strand, within GFF4910 at 12.404 kb on + strand, within GFF4910 at 12.741 kb on - strand, within GFF4910 at 12.919 kb on + strand, within GFF4910 at 12.919 kb on + strand, within GFF4910 at 12.920 kb on - strand, within GFF4910 at 13.043 kb on + strand at 13.048 kb on - strand at 13.234 kb on + strand at 13.358 kb on + strand at 13.553 kb on + strand, within GFF4911 at 13.554 kb on - strand, within GFF4911 at 13.700 kb on - strand, within GFF4911
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 11,136 + GFF4909 0.41 -0.3 11,223 + GFF4909 0.46 +0.5 11,337 + GFF4909 0.53 +0.0 11,447 + GFF4909 0.60 +0.0 11,448 - GFF4909 0.60 +0.4 11,662 + GFF4909 0.73 +0.3 11,696 + GFF4909 0.75 +0.3 11,700 + GFF4909 0.75 -0.2 11,701 - GFF4909 0.75 -0.4 11,762 + GFF4909 0.79 -0.1 11,834 + GFF4909 0.83 -0.6 11,844 + GFF4909 0.84 +0.0 11,845 - GFF4909 0.84 -0.4 12,224 + GFF4910 0.10 +0.1 12,225 - GFF4910 0.11 +0.4 12,328 + GFF4910 0.21 +0.1 12,328 + GFF4910 0.21 -0.2 12,329 - GFF4910 0.21 +0.0 12,329 - GFF4910 0.21 -0.7 12,329 - GFF4910 0.21 +0.5 12,329 - GFF4910 0.21 -0.3 12,404 + GFF4910 0.29 +0.8 12,741 - GFF4910 0.64 -1.4 12,919 + GFF4910 0.82 -1.4 12,919 + GFF4910 0.82 -0.8 12,920 - GFF4910 0.82 +0.0 13,043 + +0.7 13,048 - +0.4 13,234 + +0.3 13,358 + -0.1 13,553 + GFF4911 0.18 +0.7 13,554 - GFF4911 0.18 +0.2 13,700 - GFF4911 0.26 -0.2
Or see this region's nucleotide sequence